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Principles Of Fluorescence Spectroscopy

We explore the role of lakes in carbon cycling and global climate, examine the mechanisms influencing carbon pools and transformations in lakes, and discuss how the metabolism of carbon in the inland waters is likely to change in response to climate. Furthermore, we project changes as global climate change in the abundance and spatial distribution of lakes in the biosphere, and we revise the estimate for the global extent of carbon transformation in inland waters. This synthesis demonstrates that the global annual emissions of carbon dioxide from inland waters to the atmosphere are similar in magnitude to the carbon dioxide uptake by the oceans and that the global burial of organic carbon in inland water sediments exceeds organic carbon sequestration on the ocean floor. The role of inland waters in global carbon cycling and climate forcing may be changed by human activities, including construction of impoundments, which accumulate large amounts of carbon in sediments and emit large amounts of methane to the atmosphere. Methane emissions are also expected from lakes on melting permafrost. The synthesis presented here indicates that (1) inland waters constitute a significant component of the global carbon cycle, (2) their contribution to this cycle has significantly changed as a result of human activities, and (3) they will continue to change in response to future climate change causing decreased as well as increased abundance of lakes as well as increases in the number of aquatic impoundments.

/pdf/lakes-and-reservoirs-as-regulators-of-carbon-cycling-and-1nvh2w013k.pdf

Lakes and reservoirs as regulators of carbon cycling and climate

Dissolved organic matter (DOM) in soils plays an important role in the biogeochemistry of carbon, nitrogen, and phosphorus, in pedogenesis, and in the transport of pollutants in soils. The aim of this review is to summarize the recent literature about controls on DOM concentrations and fluxes in soi

Controls on the dynamics of dissolved organic matter in soils: a review.

The decomposition and transformation of above- and below-ground plant detritus (litter) is the main process by which soil organic matter (SOM) is formed. Yet, research on litter decay and SOM formation has been largely uncoupled, failing to provide an effective nexus between these two fundamental processes for carbon (C) and nitrogen (N) cycling and storage. We present the current understanding of the importance of microbial substrate use efficiency and C and N allocation in controlling the proportion of plant-derived C and N that is incorporated into SOM, and of soil matrix interactions in controlling SOM stabilization. We synthesize this understanding into the Microbial Efficiency-Matrix Stabilization (MEMS) framework. This framework leads to the hypothesis that labile plant constituents are the dominant source of microbial products, relative to input rates, because they are utilized more efficiently by microbes. These microbial products of decomposition would thus become the main precursors of stable SOM by promoting aggregation and through strong chemical bonding to the mineral soil matrix.

/pdf/the-microbial-efficiency-matrix-stabilization-mems-framework-3dy2xz3fhz.pdf

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

Despite their low carbon (C) content, most subsoil horizons contribute to more than half of the total soil C stocks, and therefore need to be considered in the global C cycle. Until recently, the properties and dynamics of C in deep soils was largely ignored. The aim of this review is to synthesize literature concerning the sources, composition, mechanisms of stabilisation and destabilization of soil organic matter (SOM) stored in subsoil horizons. Organic C input into subsoils occurs in dissolved form (DOC) following preferential flow pathways, as aboveground or root litter and exudates along root channels and/or through bioturbation. The relative importance of these inputs for subsoil C distribution and dynamics still needs to be evaluated. Generally, C in deep soil horizons is characterized by high mean residence times of up to several thousand years. With few exceptions, the carbon-to-nitrogen (C/N) ratio is decreasing with soil depth, while the stable C and N isotope ratios of SOM are increasing, indicating that organic matter (OM) in deep soil horizons is highly processed. Several studies suggest that SOM in subsoils is enriched in microbial-derived C compounds and depleted in energy-rich plant material compared to topsoil SOM. However, the chemical composition of SOM in subsoils is soil-type specific and greatly influenced by pedological processes. Interaction with the mineral phase, in particular amorphous iron (Fe) and aluminum (Al) oxides was reported to be the main stabilization mechanism in acid and near neutral soils. In addition, occlusion within soil aggregates has been identified to account for a great proportion of SOM preserved in subsoils. Laboratory studies have shown that the decomposition of subsoil C with high residence times could be stimulated by addition of labile C. Other mechanisms leading to destabilisation of SOM in subsoils include disruption of the physical structure and nutrient supply to soil microorganisms. One of the most important factors leading to protection of SOM in subsoils may be the spatial separation of SOM, microorganisms and extracellular enzyme activity possibly related to the heterogeneity of C input. As a result of the different processes, stabilized SOM in subsoils is horizontally stratified. In order to better understand deep SOM dynamics and to include them into soil C models, quantitative information about C fluxes resulting from C input, stabilization and destabilization processes at the field scale are necessary.

Deep soil organic matter—a key but poorly understood component of terrestrial C cycle

Dissolved organic carbon (DOC) and nitrogen (DON) represent an important part of the C and N cycles in forest ecosystems. Little is known about the controls on fluxes and concentrations of these compounds in soils under field conditions. Here we compiled published data on concentrations and fluxes of DOC and DON from 42 case studies in forest ecosystems of the temperate zone in order to evaluate controls on a larger temporal and spatial scale. The focus was on annual fluxes and concentrations in throughfall, forest floor leachates and soil solutions. In all compartments considered, concentrations and fluxes differed widely between the sites. Highest concentrations of DOC and DON were generally observed in forest floor leachates and in A horizons. Highest fluxes occurred in forest floor leachates. The fluxes of DOC and DON in forest floor leachates increased with increasing annual precipitation and were also positively related to DOC and DON fluxes with throughfall. Variation in throughfall fluxes could explain 46% and 65% of the variation in DOC and DON fluxes from the forest floor, respectively. No general difference in DOC and DON concentrations and fluxes in forest floor leachates was found when comparing coniferous and hardwood sites. Concentrations of DOC in forest floor leachates were positively correlated to the pH of the forest floor. Furthermore, there was no relationship between organic C and N stocks, soil C/N, litterfall or mineral N inputs and concentrations and fluxes of DOC and DON in forest floor leachates. Including all compartments, fluxes of DOC and DON were highly correlated. Ratios of DOC to DON calculated from fluxes from the forest floor were independent of the amount of annual precipitation, pointing to a similar response of DOC and DON to precipitation conditions. A decrease in the ratio of DOC to DON with soil depth as observed on a plot-scale, was not confirmed by data analysis on a large scale. The controls observed on annual fluxes and concentrations of DON and DOC at regional scale differed from those reported for smaller time and space scales.

Fluxes and concentrations of dissolved organic carbon and nitrogen - a synthesis for temperate forests

Summary

Dissolved organic nitrogen and carbon (DOC) are significant in the C and N cycle in terrestrial ecosystems. Little is known about their dynamics in the field and the factors regulating their concentrations and fluxes. We followed the fluxes and concentrations of the two in a Norway spruce (Picea abies (L.) Karst.) forest ecosystem in Germany from 1995 to 1997 by sampling at fortnightly intervals. Bulk precipitation, throughfall, forest floor percolates from different horizons and soil solutions from different depths were analysed for major ions, dissolved organic N and DOC. The largest fluxes and concentrations were observed in percolates of the Oi layer, which contain amino N and amino sugar N as the major components. The average ratio of dissolved organic C to N in forest floor percolates corresponded to the C/N ratio of the solid phase. Concentrations and fluxes were highly dynamic with time and decreased with depth. The largest fluxes in forest floor percolates occurred when the snow melted. The concentrations and fluxes of dissolved organic N were significantly correlated with DOC, but the correlation was weak, indicating different mechanisms of release and consumption. The dynamics of dissolved organic N and DOC in forest floor percolates were not explained by pH and ionic strength of the soil solution nor by the water flux, despite large variations in these. Furthermore, the release of these fractions from the forest floor was not related to the quality and amount of throughfall. Concentrations of dissolved organic N in forest floor percolates increased with soil temperature, while temperature effects on DOC were less pronounced, but their fluxes from the forest floor were not correlated with temperature. In the growing season concentrations of both dissolved organic N and C in forest floor percolates decreased with increasing intensity of throughfall. Thus, the average throughfall intensity was more important than the amount of percolate in regulating their concentrations in forest floor percolates. Our data emphasize the role of dissolved organic N and DOC in the N and C cycle of forest ecosystems.

Dynamics of dissolved organic nitrogen and carbon in a Central European Norway spruce ecosystem

DyDOC describes soil carbon dynamics, with a focus on dissolved organic carbon (DOC). The model treats the soil as a three-horizon profile, and simulates metabolic carbon transformations, sorption reactions and water transport. Humic substances are partitioned into three fractions, one of which is immobile, while the other two (hydrophilic and hydrophobic) can pass into solution as DOC. DyDOC requires site-specific soil characteristics, and is driven by inputs of litter and water, and air and soil temperatures. The model operates on hourly and daily time steps, and can simulate carbon cycling over both long (hundreds-to-thousands of years) and short (daily) time scales. An important feature of DyDOC is the tracking of 14C, from its entry in litter to its loss as DO14C in drainage water, enabling information about C dynamics to be obtained from both long-term radioactive decay, and the characteristic 14C pulse caused by thermonuclear weapon testing during the 1960s ("bomb carbon"). Parameterisation is performed by assuming a current steady state. Values of a range of variables, including C pools, annual DOC fluxes, and 14C signals, are combined into objective functions for least-squares minimisation. DyDOC has been applied successfully to spruce forest sites at Birkenes (Norway) and Waldstein (Germany), and most of the parameters have similar values at the two sites. The results indicate that the supply of DOC from the surface soil horizon to percolating water depends upon the continual metabolic production of easily leached humic material. In contrast, concentrations and fluxes of DOC in the deeper soil horizons are controlled by sorption processes, involving comparatively large pools of leachable organic matter. Times to reach steady state are calculated to be several hundred years in the organic layer, and hundreds-to-thousands of years in the deeper mineral layers. It is estimated that DOC supplies 89% of the mineral soil carbon at Birkenes, and 73% at Waldstein. The model, parameterised with "steady state" data, simulates short-term variations in DOC concentrations and fluxes, and in DO14C, which are in approximate agreement with observations.

Modelling the production and transport of dissolved organic carbon in forest soils

Background and aims Fine root decomposition contributes significantly to element cycling in terrestrial ecosystems. However, studies on root decomposition rates and on the factors that potentially influence them are fewer than those on leaf litter decomposition. To study the effects of region and land use intensity on fine root decomposition, we established a large scale study in three German regions with different climate regimes and soil properties. Methods In 150 forest and 150 grassland sites we deployed litterbags (100 μm mesh size) with standardized litter consisting of fine roots from European beech in forests and from a lowland mesophilous hay meadow in grasslands. In the central study region, we compared decomposition rates of this standardized litter with root litter collected on-site to separate the effect of litter quality from environmental factors. Results Standardized herbaceous roots in grassland soils decomposed on average significantly faster (24± 6 % mass loss after 12 months, mean ± SD) than beech roots in forest soils (12±4 %; p<0.001). Fine root decomposition varied among the three study regions. Land use intensity, in particular N addition, decreased fine root decomposition in grasslands. The initial lignin:N ratio explained 15 % of the variance in grasslands and 11 % in forests. Soil moisture, soil temperature, and C:N ratios of soils together explained 34 % of the variance of the fine root mass loss in grasslands, and 24 % in forests. Conclusions Grasslands, which have higher fine root biomass and root turnover compared to forests, also have higher rates of root decomposition. Our results further show that at the regional scale fine root decomposition is influenced by environmental variables such as soil moisture, soil temperature and soil nutrient content. Additional variation is explained by root litter quality.

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Beate Michalzik

Papers

Controls on the dynamics of dissolved organic matter in soils: a review.

Fluxes and concentrations of dissolved organic carbon and nitrogen - a synthesis for temperate forests

Dynamics of dissolved organic nitrogen and carbon in a Central European Norway spruce ecosystem

Modelling the production and transport of dissolved organic carbon in forest soils

Factors controlling decomposition rates of fine root litter in temperate forests and grasslands