Showing papers in "Plant and Soil in 2014"

Agricultural uses of plant biostimulants

Abstract: Plant biostimulants are diverse substances and microorganisms used to enhance plant growth. The global market for biostimulants is projected to increase 12 % per year and reach over $2,200 million by 2018. Despite the growing use of biostimulants in agriculture, many in the scientific community consider biostimulants to be lacking peer-reviewed scientific evaluation. This article describes the emerging definitions of biostimulants and reviews the literature on five categories of biostimulants: i. microbial inoculants, ii. humic acids, iii. fulvic acids, iv. protein hydrolysates and amino acids, and v. seaweed extracts. The large number of publications cited for each category of biostimulants demonstrates that there is growing scientific evidence supporting the use of biostimulants as agricultural inputs on diverse plant species. The cited literature also reveals some commonalities in plant responses to different biostimulants, such as increased root growth, enhanced nutrient uptake, and stress tolerance.

Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998–2013)

Abstract: Background Inoculation of plants to enhance yield of crops and performance of other plants is a century old, proven technology for rhizobia and a newer venue for plant growth-promoting bacteria and other plant symbionts. The two main aspects dominating the success of inoculation are the effectiveness of the bacterial isolate and the proper application technology.

Does biochar influence soil physical properties and soil water availability

Abstract: This study aims to (i) determine the effects of incorporating 47 Mg ha−1 acacia green waste biochar on soil physical properties and water relations, and (ii) to explore the different mechanisms by which biochar influences soil porosity. The pore size distribution of the biochar was determined by scanning electron microscope and mercury porosimetry. Soil physical properties and water relations were determined by in situ tension infiltrometers, desorption and evaporative flux on intact cores, pressure chamber analysis at −1,500 kPa, and wet aggregate sieving. Thirty months after incorporation, biochar application had no significant effect on soil moisture content, drainable porosity between –1.0 and −10 kPa, field capacity, plant available water capacity, the van Genuchten soil water retention parameters, aggregate stability, nor the permanent wilting point. However, the biochar-amended soil had significantly higher near-saturated hydraulic conductivity, soil water content at −0.1 kPa, and significantly lower bulk density than the unamended control. Differences were attributed to the formation of large macropores (>1,200 μm) resulting from greater earthworm burrowing in the biochar-amended soil. We found no evidence to suggest application of biochar influenced soil porosity by either direct pore contribution, creation of accommodation pores, or improved aggregate stability.

Effects of different plant root exudates and their organic acid components on chemotaxis, biofilm formation and colonization by beneficial rhizosphere-associated bacterial strains

Abstract: It is necessary to understand the roles of root exudates involved in plant-microbe interactions to inform practical application of beneficial rhizosphere microbial strains. Colonization of Bacillus amyloliquefaciens SQR9 (isolated from cucumber rhizosphere) and Bacillus subtilis N11 (isolated from banana rhizosphere) of their original host was found to be more effective as compared to the colonization of the non-host plant. Organic acids in the root exudates of the two plants were identified by High performance liquid chromatography (HPLC). The chemotactic response and effects on biofilm formation were assessed for SQR9 and N11 in response to cucumber and banana root exudates, as well as their organic acids components. Citric acid detected exclusively in cucumber exudates could both attract SQR9 and induce its biofilm formation, whereas only chemotactic response but not biofilm formation was induced in N11. Fumaric acid that was only detected in banana root exudates revealed both significant roles on chemotaxis and biofilm formation of N11, while showing only effects on biofilm formation but not chemotaxis of SQR9. The relationship between PGPR strain and root exudates components of its original host might contribute to preferential colonization. This study advances a clearer understanding of the mechanisms relevant to application of PGPR strains in agricultural production.

Multiple factors influence the role of arbuscular mycorrhizal fungi in soil aggregation—a meta-analysis

Abstract: Soil aggregation is a crucial aspect of ecosystem functioning in terrestrial ecosystems. Arbuscular mycorrhizal fungi (AMF) play a key role in soil aggregate formation and stabilization. Here we quantitatively analyzed the importance of experimental settings as well as biotic and abiotic factors for the effectiveness of AMF to stabilize soil macroaggregates. We gathered 35 studies on AMF and soil aggregation and tested 13 predictor variables for their relevance with a boosted regression tree analysis and performed a meta-analysis, fitting individual random effects models for each variable. The overall mean effect of inoculation with AMF on soil aggregation was positive and predictor variable means were all in the range of beneficial effects. Pot studies and studies with sterilized sandy soil, near neutral soil pH, a pot size smaller than 2.5 kg and a duration between 2.2 and 5 months were more likely to result in stronger effects of AMF on soil aggregation than experiments in the field, with non-sterilized or fine textured soil or an acidic pH. This is the first study to quantitatively show that the effect of AMF inoculation on soil aggregation is positive and context dependent. Our findings can help to improve the use of this important ecosystem process, e.g. for inoculum application in restoration sites.

Ecological mitigation of hillslope instability: ten key issues facing researchers and practitioners

Abstract: Plants alter their environment in a number of ways. With correct management, plant communities can positively impact soil degradation processes such as surface erosion and shallow landslides. However, there are major gaps in our understanding of physical and ecological processes on hillslopes, and the application of research to restoration and engineering projects. To identify the key issues of concern to researchers and practitioners involved in designing and implementing projects to mitigate hillslope instability, we organized a discussion during the Third International Conference on Soil Bio- and Eco-Engineering: The Use of Vegetation to Improve Slope Stability, Vancouver, Canada, July 2012. The facilitators asked delegates to answer three questions: (i) what do practitioners need from science? (ii) what are some of the key knowledge gaps? (iii) what ideas do you have for future collaborative research projects between practitioners and researchers? From this discussion, ten key issues were identified, considered as the kernel of future studies concerning the impact of vegetation on slope stability and erosion processes. Each issue is described and a discussion at the end of this paper addresses how we can augment the use of ecological engineering techniques for mitigating slope instability. We show that through fundamental and applied research in related fields (e.g., soil formation and biogeochemistry, hydrology and microbial ecology), reliable data can be obtained for use by practitioners seeking adapted solutions for a given site. Through fieldwork, accessible databases, modelling and collaborative projects, awareness and acceptance of the use of plant material in slope restoration projects should increase significantly, particularly in the civil and geotechnical communities.

The art of isolating nitrogen-fixing bacteria from non-leguminous plants using N-free semi-solid media: a practical guide for microbiologists

Abstract: Nitrogen-fixing bacteria or diazotrophs have been isolated for many years using different formulations of N-free semi-solid media. However, the strategies used to isolate them, and the recipes of these media, are scattered through the published literature and in other sources that are more difficult to access and which are not always retrievable. Therefore, the aim of this work was to collate the various methods and recipes, and to provide a comprehensive methodological guide and their use by the scientific community working in the field of biological nitrogen fixation (BNF), particularly with non-leguminous plants. Procedures used for bacterial counting and identification either from rhizosphere soil or on the surface of, or within, plant tissues (to access “endophytic” bacteria) are presented in detail, including colony and cell morphologies. More importantly, appropriate recipes available for each N-free semi-solid culture medium that are used to count and isolate various diazotrophs are presented. It is recognized by those working in the field of BNF with non-legumes that the development of the N-free semi-solid medium has allowed a tremendous accumulation of knowledge on the ecology and physiology of their associated diazotrophs. At least 20 nitrogen-fixing species have been isolated and identified based on the enrichment method originally developed by Dobereiner, Day and collaborators in the 70’s. In spite of all the advances in molecular techniques used to detect bacteria, in most cases the initial isolation and identification of these diazotrophs still requires semi-solid media. The introduction of the N-free semi-solid medium opened new opportunities for those working in the area of BNF with non-legumes not only for elucidating the important role played by their associated microorganisms, but also because some of these bacteria that were isolated using semi-solid media are now being recommended as plant growth-promoting inoculants for sugarcane (Saccharum sp.), maize (Zea mays) and wheat (Triticum aestivum) in Brazil and other countries. Further progress in the field could be made by using a combination of culture-independent molecular community analyses, in situ activity assessments with probe-directed enrichment, and isolation of target strains using modified or standard semi-solid media.

Alleviation of drought stress in mung bean by strain Pseudomonas aeruginosa GGRJ21

Abstract: Mung bean (Vigna radiata (L.) R. Wilczek), a widely cultivated pulse crops in India, experiences severe drought stress during the cultivation period. Apart from the conventional plant breeding and transgenic approaches, the application of plant growth-promoting rhizobacteria (PGPR) has always been a promising approach to improve abiotic stress tolerance in crop plants. The aim of the present study was to investigate the role of mung bean rhizosphere-associated Pseudomonas aeruginosa GGRJ21 strain on drought stress alleviation in the host plant. Fluorescent pseudomonads were isolated from mung bean rhizosphere by employing a culture-dependent approach. The role of osmotic stress tolerant P. aeruginosa GGRJ21 on drought stress alleviation in host plants was further examined in both the green house and field conditions. An elevated production of reactive oxygen species scavenging enzymes and cellular osmolytes; increased root length, shoot length, dry weight, relative water content; and a stronger upregulation of three drought stress-responsive genes, i.e., dehydration-responsive element binding protein (DREB2A), catalase (CAT1), and dehydrin (DHN) were observed in GGRJ21 inoculated plants in comparison with the uninoculated control plants tested under drought conditions. The field experimental data show an increase in biomass and better growth and development in inoculated and stressed plants when compared with untreated and stressed plants. P. aeruginosa GGRJ21 strain was found to elicit water stress tolerance in mung bean plants by accelerating the accumulation of inherent levels of antioxidant enzymes, cell osmolytes, and consistently expediting the upregulation of stress responsive genes in PGPR-treated plants under water stress conditions.

Coarse and fine root plants affect pore size distributions differently

Abstract: Aims Small scale root-pore interactions require validation of their impact on effective hydraulic processes at the field scale. Our objective was to develop an interpretative framework linking root effects on macroscopic pore parameters with knowledge at the rhizosphere scale.

Isolation of ACC deaminase-producing habitat-adapted symbiotic bacteria associated with halophyte Limonium sinense (Girard) Kuntze and evaluating their plant growth-promoting activity under salt stress

Abstract: Many plant growth-promoting endophytes (PGPE) possessing 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity can reduce the level of stress ethylene and assist their host plants cope with various biotic and abiotic stresses. However, information about the endophytic bacteria colonizing in the coastal halophytes is still very scarce. This study aims at isolating efficient ACC deaminase-producing plant growth-promoting (PGP) bacterial strains from the inner tissues of a traditional Chinese folk medicine Limonium sinense (Girard) Kuntze, a halophyte which has high economic and medicinal values grown in the coastal saline soils. Their PGP activity and effects on host seed germination and seedling growth under salinity stress were also evaluated. A total of 126 isolates were obtained from the surface sterilized roots, stems and leaves of L. sinense (Girard) Kuntze. They were initially selected for their ability to produce ACC deaminase as well as other PGP properties such as production of indole-3-acetic acid (IAA), N2-fixation, and phosphate-solubilizing activities and subsequently identified by the 16S rRNA gene sequencing. For selected strains, seed germination, seedling growth, and flavonoids production in axenically growth L. sinense (Girard) Kuntze seedlings at different NaCl concentrations (0–500 mM) were quantified. Thirteen isolates possessing ACC deaminase activity were obtained. The 16S rRNA gene sequencing analysis showed them to belong to eight genera: Bacillus, Pseudomonas, Klebsiella, Serratia, Arthrobacter, Streptomyces, Isoptericola, and Microbacterium. Inoculation with four of the selected ACC deaminase-producing strains not only stimulated the growth of the host plant but also influenced the flavonoids accumulation. All four strains could colonize and can be re-isolated from the host plant interior tissues. These results demonstrate that ACC deaminase-producing habitat-adapted symbiotic bacteria isolated from halophyte could enhance plant growth under saline stress conditions and the PGPE strains could be appropriate as bioinoculants to enhance soil fertility and protect the plants against salt stress.

Plant: soil interactions in temperate multi-cropping production systems

Abstract: Multi-cropping approaches in production systems, where more than one crop cultivar or species are grown simultaneously, are gaining increased attention and application. Benefits can include increased production, effective pest, disease and weed control, and improved soil health. The effects of such practices on the range of interactions within the plant-soil system are manifest via plant interspecific competition, pest and disease attenuation, soil community composition and structure, nutrient cycling, and soil structural dynamics. Interplant diversity and competition effectively increases the nature and extent of root networks, tending to lead to more efficient resource use in time and space. Increased competitive ability at a system level, and allelopathic interactions, can reduce weed, pest and disease severity. Soil biotic communities are affected by plant diversity, which can increase abundance, diversity and activity of functional groups. Attendant rhizosphere-located processes can facilitate nutrient uptake between component crops. Whilst there are few studies into multi-cropping effects on soil structure, it is hypothesised that such processes are manifest particularly via the role which the belowground biota play in soil structural dynamics. A deeper understanding of eco-physiological processes affecting weed, pest and disease dynamics in the context of multiple cropping scenarios, and breeding cultivars to optimise mutualistic and allelopathic traits of crop mixtures could significantly increase productivity and adoption of more sustainable farming practices. Wider consideration needs to be given to plant: soil interactions when crop plants are grown in the context of mixtures, i.e. as communities as opposed to monotonous populations. In particular, a better understanding is required of how root systems develop in the context of mixtures and the extent to which resultant interactions with the soil biota are context-dependent. A significant challenge is that crop cultivars or production systems optimised for monocultural circumstances should not be assumed to be most suited for multi-cropping scenarios, and hence alternative strategies for developing new production systems need to take this into account.

Impacts of acid deposition, ozone exposure and weather conditions on forest ecosystems in Europe: an overview

Abstract: In 1994, a “Pan-European Programme for Intensive and Continuous Monitoring of Forest Ecosystems” started to contribute to a better understanding of the impact of air pollution, climate change and natural stress factors on forest ecosystems. The programme today counts approximately 760 permanent observation plots including near 500 plots with data on both air quality and forest ecosystem impacts. This paper first presents impacts of air pollution and climate on forests ecosystems as reported in the literature on the basis of laboratory and field research. Next, results from monitoring studies, both at a European wide scale and related national studies, are presented in terms of trends and geographic variations in nitrogen and sulphur deposition and ozone concentrations and the impacts of those changes in interaction with weather conditions on (i) water and element budgets and nutrient-acidity status, (ii) forest crown condition, (iii) forest growth and carbon sequestration and (iv) species diversity of the ground vegetation. The empirical, field based forest responses to the various drivers are evaluated in view of available knowledge. Analyses of large scale monitoring data sets show significant effects of atmospheric deposition on nutrient-acidity status in terms of elevated nitrogen and sulphur or sulphate concentrations in forest foliage and soil solution and related soil acidification in terms of elevated aluminium and/or base cation leaching from the forest ecosystem. Relationships of air pollution with crown condition, however, appear to be weak and limited in time and space, while climatic factors appear to be more important drivers. Regarding forest growth, monitoring results indicate a clear fertilization effect of N deposition on European forests but the field evidence for impacts of ambient ozone exposure on tree growth is less clear.

Improved heat stress tolerance of wheat seedlings by bacterial seed treatment

Abstract: To investigate if rhizosphere bacteria can improve heat tolerance of wheat. Wheat (Triticum aestivum) seeds of the cultivars Olivin and Sids1 were treated with Bacillus amyloliquefaciens UCMB5113 or Azospirillum brasilense NO40 and young seedlings tested for management of short term heat stress. Bacterial treatment improved heat stress management of wheat. Olivin showed higher heat tolerance than Sids1 both with non-inoculated and inoculated seeds. Heat increased transcript levels of several stress related genes in the leaves, while expression was lower in inoculated plants but elevated compared with the control. Enzymes of the ascorbate-glutathione redox cycle were activated in leaves after heat challenge but showed a lower response in inoculated plants. Metabolite profiling distinguished different treatments dependent on analysis technique with respect to primary and secondary metabolites. Analysis of some plant stress regulatory genes showed that bacterial treatment increased transcript levels while effects of heat treatment varied. The improvement of heat tolerance by bacteria seems associated with reduced generation of reactive oxygen species (and consequently less cell damage), small changes in the metabolome while preactivation of certain heat shock transcription factors seems important. Seed inoculation with beneficial bacteria seems a promising strategy to improve heat tolerance of wheat.

Factors controlling decomposition rates of fine root litter in temperate forests and grasslands

Abstract: Background and aims Fine root decomposition contributes significantly to element cycling in terrestrial ecosystems. However, studies on root decomposition rates and on the factors that potentially influence them are fewer than those on leaf litter decomposition. To study the effects of region and land use intensity on fine root decomposition, we established a large scale study in three German regions with different climate regimes and soil properties. Methods In 150 forest and 150 grassland sites we deployed litterbags (100 μm mesh size) with standardized litter consisting of fine roots from European beech in forests and from a lowland mesophilous hay meadow in grasslands. In the central study region, we compared decomposition rates of this standardized litter with root litter collected on-site to separate the effect of litter quality from environmental factors. Results Standardized herbaceous roots in grassland soils decomposed on average significantly faster (24± 6 % mass loss after 12 months, mean ± SD) than beech roots in forest soils (12±4 %; p<0.001). Fine root decomposition varied among the three study regions. Land use intensity, in particular N addition, decreased fine root decomposition in grasslands. The initial lignin:N ratio explained 15 % of the variance in grasslands and 11 % in forests. Soil moisture, soil temperature, and C:N ratios of soils together explained 34 % of the variance of the fine root mass loss in grasslands, and 24 % in forests. Conclusions Grasslands, which have higher fine root biomass and root turnover compared to forests, also have higher rates of root decomposition. Our results further show that at the regional scale fine root decomposition is influenced by environmental variables such as soil moisture, soil temperature and soil nutrient content. Additional variation is explained by root litter quality.

Influence of plant root system morphology and architectural traits on soil shear resistance

Abstract: Vegetation can be used to stabilise slopes with regard to shallow landslides, but the optimal plant architecture for conferring resistance is not known. This study aims at identifying root morphological traits which confer the most resistance to soil during shearing. Three species used for slope stabilisation (Ricinus communis L., Jatropha curcas L. and Rhus chinensis Mill.) were grown for 10 months in large shear boxes filled with silty clay similar to that found in Yunnan, China. Direct shear tests were then performed and compared to fallow soil. Root systems were excavated and a large number of traits measured. Shear strength and deformation energy were enhanced by the presence of roots. Regardless of confining pressure, R. communis conferred most resistance due to its taprooted system with many vertical roots. J. curcas possessed oblique and vertical roots which created fragile zones throughout the soil profile. The least efficient root system was R. chinensis which possessed many horizontal lateral roots. Soil mechanical properties were most influenced by (i) density of roots crossing the shear plane, (ii) branching density throughout the soil profile, (iii) total length of coarse roots above the shear plane and (iv) total volume of coarse roots and fine root density below the shear plane. During failure, fine, short and branched roots slipped through soil rather than breaking. Root morphological traits such as density, branching, length, volume, inclination and orientation influence significantly soil mechanical properties.

Does radial oxygen loss and iron plaque formation on roots alter Cd and Pb uptake and distribution in rice plant tissues

Abstract: Background and Aims Metal (e.g. Cd and Pb) pollution in agricultural soils and crops have aroused considerable attention in recent years. This study aimed to evaluate the effects of ROL and Fe plaque on Cd and Pb accumulation and distribution in the rice plant.

Effect of Cd-tolerant plant growth-promoting rhizobium on plant growth and Cd uptake by Lolium multiflorum Lam. and Glycine max (L.) Merr. in Cd-contaminated soil

Abstract: Plant growth-promoting rhizobacteria (PGPR) have been widely studied for agricultural applications. One aim of this study was to isolate cadmium (Cd)-tolerant bacteria from nodules of Glycine max (L.) Merr. grown in heavy metal-contaminated soil in southwest of China. The plant growth-promoting (PGP) traits and the effects of the isolate on plant growth and Cd uptake by legume and non-legume plants in Cd-polluted soil were investigated. Cd-tolerant bacteria were isolated by selective media. The isolates were identified by 16S rRNA gene and phylogenetic analysis. The PGR traits of the isolates were evaluated in vitro. Cd in soil and plant samples was determined by ICP-MS. One of the most Cd-tolerant bacteria simultaneously exhibited several PGP traits. Inoculation with the PGPR strain had positive impacts on contents of photosynthesis pigments and mineral nutrients (Fe or Mg) in plant leaves. The shoot dry weights of Lolium multiflorum Lam. increased significantly compared to uninoculated control. Furthermore, inoculation with the PGPR strain increased the Cd concentrations in root of L. multiflorum Lam. and extractable Cd concentrations in the rhizosphere, while the Cd concentrations in root and shoot of G. max (L.) Merr. significantly decreased. This study indicates that inoculation with Cd-tolerant PGPR can alleviate Cd toxicity to the plants, increase Cd accumulation in L. multiflorum Lam. by enhancing Cd availability in soils and plant biomass, but decrease Cd accumulation in G. max (L.) Merr. by increasing Fe availability, thus highlighting new insight into the exploration of PGPR on Cd-contaminated soil.

Assessment of nitrate leaching loss on a yield-scaled basis from maize and wheat cropping systems

Abstract: It is so far a gap in knowledge to assess nitrate (NO3 −) leaching loss linking with crop yield for a given cereal cropping system. We conducted a meta-analysis on 32 published studies reporting both NO3 − leaching losses and crop yields in the maize (N = 20) and wheat (N = 12) systems. On average, 22 % and 15 % of applied fertilizer N to wheat and maize systems worldwide are leached in the form of NO3 −, respectively. The average area-scaled NO3 - leaching loss for maize (57.4 kg N ha−1) was approx. two times higher than for wheat (29.0 kg N ha−1). While, if scaled to crop yields, the average yield-scaled NO3 − losses were comparable between maize (5.40 kg N Mg−1) and wheat (5.41 kg N Mg−1) systems. Across all sites, the lowest yield-scaled NO3 − leaching losses were observed at slightly suboptimal fertilization rates, corresponding to 90 % and 96 % of maximum maize or wheat yields, respectively. Our findings suggest that small adjustments of agricultural N management practices can effectively reduce yield-scaled NO3 − leaching losses. However, further targeted field experiments are still needed to identify at regional scale best agricultural management practices for reducing yield-scaled NO3 − leaching losses in maize and wheat systems.

Molecular mechanisms of Al tolerance in gramineous plants

Abstract: Aluminum (Al) toxicity has limited the productivity and expansion of cereal crops on acid soils; however, a number of plant species or cultivars have developed different strategies for detoxifying aluminum both internally and externally. This review focuses on recent progress on molecular mechanisms of Al tolerance in gramineous plants. A common mechanism in all gramineous plants is the secretion of organic acid anions (citrate and malate) from the roots. Genes belonging to ALMT (for Aluminum-activated malate transporter) and MATE (Multidrug and toxic compound extrusion) family involved in the secretion have been identified in several plant species; however, different plant species show different gene expression patterns including Al-induction, spatial and temporal expression, and tissue localization. Furthermore, the mechanisms regulating the gene expression also differ with plant species, which are achieved by increased tandem repeated element, increase of copy number, insertion of transposon, or alteration of cis-acting element. In addition to these common Al exclusion mechanisms, rice as a highly Al-tolerant species has developed a number of other mechanisms for detoxification of Al. A transcription factor for Al tolerance ART1 identified in rice regulates at least 30 genes implicated in internal and external detoxification of Al. These multiple genes may contribute to the high Al tolerance of rice. In the future, regulation mechanisms of Al-tolerance genes need to be further investigated.

Successive straw biochar application as a strategy to sequester carbon and improve fertility: A pot experiment with two rice/wheat rotations in paddy soil

Abstract: A pot study spanning four consecutive crop seasons was conducted to compare the effects of successive rice straw biochar/rice straw amendments on C sequestration and soil fertility in rice/wheat rotated paddy soil. We adopted 4.5 t ha−1, 9.0 t ha−1 biochar and 3.75 t ha−1 straw for each crop season with an identical dose of NPK fertilizers. We found no major losses of biochar-C over the 2-year experimental period. Obvious reductions in CH4 emission were observed from rice seasons under the biochar application, despite the fact that the biochar brought more C into the soil than the straw. N2O emissions with biochar were similar to the controls without additives over the 2-year experimental period. Biochar application had positive effects on crop growth, along with positive effects on nutrient (N, P, K, Ca and Mg) uptake by crop plants and the availability of soil P, K, Ca and Mg. High levels of biochar application over the course of the crop rotation suppressed NH3 volatilization in the rice season, but stimulated it in the wheat season. Converting straw to biochar followed by successive application to soil is viable for soil C sequestration, CH4 mitigation, improvements of soil and crop productivity. Biochar soil amendment influences NH3 volatilization differently in the flooded rice and upland wheat seasons, respectively.

Identifying the critical period for waterlogging on yield and its components in wheat and barley

Abstract: Crop tolerance to waterlogging depends on factors such as species sensitivity and the stage of development that waterlogging occurs. The aim of this study was to identify the critical period for waterlogging on grain yield and its components, when applied during different stages of crop development in wheat and barley. Two experiments were carried out (E1: early sowing date, under greenhouse; E2: late sowing date, under natural conditions). Waterlogging was imposed during 15–20 days in 5 consecutive periods during the crop cycle (from Leaf 1 emergence to maturity). The greatest yield penalties occurred when waterlogging was applied from Leaf 7 appearance on the main stem to anthesis (from 34 to 92 % of losses in wheat, and from 40 to 79 % in barley for E1 and E2 respectively). Waterlogging during grain filling reduced yield to a lesser degree. In wheat, reductions in grain number were mostly explained by reduced grain number per spike while in barley, by variations in the number of spikes per plant. The time around anthesis was identified as the most susceptible period to waterlogging in wheat and barley. Exposing the crop to more stressful conditions, e.g. delaying sowing date, magnified the negative responses to waterlogging, although the most sensitive stage (around anthesis) remained unchanged.

Litter fingerprint on microbial biomass, activity, and community structure in the underlying soil

Abstract: Little is known about how plant leaf litter decomposing on the soil surface is affecting microbial communities in the underlying soil. Here we examined the effects of decomposing leaf litter of different initial chemistry on biomass, stoichiometry, community structure and activity of microorganisms in the soil underneath the decaying litter layer. Leaf litter from six different neotropical tree species with contrasted quality decomposed on top of a common tropical soil in a laboratory microcosm experiment over 98 days. At the end of the experiment we determined microbial biomass C, N, and P, microbial community structure (PLFA), and community level physiological profiles (CLPP) from the top soil. Despite growing in a common soil substrate, soil microorganisms were strongly affected by litter species, especially by the soluble litter fraction. While litters with low soluble C content did not affect the soil microbial community, litters with high soluble C content led to an increase of microbial biomass and to a structural shift to relatively more Gram-negative bacteria. Changing community structure resulted in changes of catabolic capacity of microorganisms to metabolize a range of different C substrates. The large differences in leachate N and P among litter species, in contrast, had no effect on soil microbial parameters. Our data suggest that plant litter decomposing on the soil surface exhibit a strong and predictable leachate C-control over microbial community biomass, structure and function in the underlying soil.

Spatial and temporal dynamics of hotspots of enzyme activity in soil as affected by living and dead roots—a soil zymography analysis

Abstract: Hotspots of enzyme activity in soil strongly depend on carbon inputs such as rhizodeposits and root detritus. In this study, we compare the effect of living and dead Lupinus polyphyllus L. roots on the small-scale distribution of cellulase, chitinase and phosphatase activity in soil. Soil zymography, a novel in situ method, was used to analyze extracellular cellulase, chitinase and phosphatase activity in the presence of i. living L. polyphyllus roots prior to shoot cutting and ii. dead/dying roots 10, 20 and 30 days after shoot cutting. After shoot cutting, cellulase and chitinase activities increased and were highest at the root tips. The areas of high cellulase and phosphatase activity extend up to 55 mm away from the root. Moreover, we observed microhotspots of cellulose, chitinase, and phosphatase activity up to 60 mm away from the next living root. The number and activity of microhotspots of chitinase activity was maximal 10 days after shoot cutting. The study showed that young root detritus stimulates enzyme activities stronger than living roots. Soil zymography allowed identification of microhotspots of enzyme activity up to several cm away from living and dying roots, which most likely were caused by arbuscular mycorrhizal fungi.

Biochar application to a fertile sandy clay loam in boreal conditions: effects on soil properties and yield formation of wheat, turnip rape and faba bean

Abstract: We studied the effect of different biochar (BC) application rates on soil properties, crop growth dynamics and yield on a fertile sandy clay loam in boreal conditions. In a three-year field experiment conducted in Finland, the field was divided into three sub-experiments with a split-plot experimental design, one for each crop: wheat (Triticum aestivum), turnip rape (Brassica rapa), and faba bean (Vicia faba). The main plot factor was BC rate (0, 5 and 10 t DM ha−1) and the sub-plot factor was the N-P-K fertiliser rate. Soil physico-chemical properties as well as plant development, yield components and quality were investigated. BC addition did not significantly affect the soil chemical composition other than the increased C and initially increased K contents. Increased soil moisture content was associated with BC application, especially at the end of the growing seasons. BC decreased the N content of turnip rape and wheat biomass in 2010, thus possibly indicating an initial N immobilisation. In dry years, the seed number per plant was significantly higher in faba bean and turnip rape when grown with BC, possibly due to compensation for decreased plant density and relieved water deficit. However, the grain yields and N uptake with BC addition were not significantly different from the control in any year. Even though BC application to a fertile sandy clay loam in a boreal climate might have relieved transient water deficit and thereby supported yield formation of crops, it did not improve the yield or N uptake.

Understanding the boron transport network in plants

Abstract: Boron is an essential nutrient for plants and has a largely structural role in development. Globally, there are large tracts of arable land that are deficient in boron, and others where plant growth is restricted by high and toxic boron concentrations. Plants have evolved a range of strategies to cope with deficiency and excess, and considerable genotypic variation exists in responses to variable boron supply. Boron is available to plants as boric acid, a small molecule with a high membrane permeability compared to other mineral nutrients. As a result, its uptake and distribution in plants can be more difficult to control. This review examines the interconnecting network of processes that are employed by plants to try to achieve optimal growth under conditions where the boron supply may be low, adequate or potentially toxic. The emerging picture of boron movement in plants is of a complex multi-layered system designed to optimise the use of boron over a broad range of concentrations. At the cellular level, plants can switch the direction of boron flow through the polar expression of membrane transporters, while at the whole plant level, integration of xylem and phloem transfer can deliver boron to specific tissues dependent on developmental stage.

Effect of selenium fertilization on the accumulation of cadmium and lead in rice plants

Abstract: The accumulation of cadmium and lead in rice (Oryza sativa L.) grains is a potential threat to human health. In this study, the effect of selenium fertilization on the uptake and translocation of cadmium and lead in rice plants was investigated. Rice plants were cultivated using cadmium and lead contaminated soils with selenium addition at three concentrations (0, 0.5 and 1 mg kg−1). At maturity, plants were harvested, and element concentrations in rice tissues were analyzed by using ICP-MS. Selenium application significantly increased selenium accumulation in rice grain, and markedly decreased cadmium and lead concentrations in rice tissues. In brown rice grains, selenium application reduced cadmium concentrations by 44.4 %, but had no significant effect on lead accumulation. Selenium application significantly decreased metal mobility in soils, at 0.5 mg kg−1 treatment, the translocation factor of cadmium and lead from soil to iron plaque decreased by 71 and 33 % respectively. The mechanism of selenium mitigating of heavy metal accumulation in rice could be decreasing metal bioavailability in soil. Selenium fertilization could be an effective and feasible method to enrich selenium and reduce cadmium levels in brown rice.

Soil water uptake by trees using water stable isotopes (δ2H and δ18O)−a method test regarding soil moisture, texture and carbonate

Abstract: Stable isotopes of oxygen and hydrogen are often used to determine plant water uptake depths We investigated whether and to what extend soil moisture, clay content, and soil calcium carbonate influences the water isotopic composition In the laboratory, dried soil samples varying in clay content were rewetted with different amounts of water of known isotopic composition Further, we removed soil carbonate from a subset of samples prior to rewetting Water was extracted from samples via cryogenic vacuum extraction and analysed by mass spectrometry The isotopic composition of extracted soil water was similarly depleted in both 18O and 2H with decreasing soil moisture and increasing clay and carbonate content Soil carbonate changed the δ18O composition while δ2H was not affected Our results indicate that soil carbonate can cause artifacts for 18O isotopic composition of soil water At low soil moisture and high carbonate content this could lead to conflicting results for δ18O and δ2H in plant water uptake studies

Nutrient availability and pH jointly constrain microbial extracellular enzyme activities in nutrient-poor tundra soils

Abstract: Tundra soils, which usually contain low concentrations of soil nutrients and have a low pH, store a large proportion of the global soil carbon (C) pool. The importance of soil nitrogen (N) availability for microbial activity in the tundra has received a great deal of attention; however, although soil pH is known to exert a considerable impact on microbial activities across ecosystems, the importance of soil pH in the tundra has not been experimentally investigated. We tested a hypothesis that low nutrient availability and pH may limit microbial biomass and microbial capacity for organic matter degradation in acidic tundra heaths by analyzing potential extracellular enzyme activities and microbial biomass after 6 years of factorial treatments of fertilization and liming. Increasing nutrients enhanced the potential activity of β-glucosidase (synthesized for cellulose degradation). Increasing soil pH, in contrast, reduced the potential activity of β-glucosidase. The soil phospholipid fatty acid concentrations (PLFAs; indicative of the amount of microbial biomass) increased in response to fertilization but were not influenced by liming. Our results show that soil nutrient availability and pH together control extracellular enzyme activities but with largely differing or even opposing effects. When nutrient limitation was alleviated by fertilization, microbial biomass and enzymatic capacity for cellulose decomposition increased, which likely facilitates greater decomposition of soil organic matter. Increased soil pH, in contrast, reduced enzymatic capacity for cellulose decomposition, which could be related with the bioavailability of organic substrates.

The intercropping cowpea-maize improves soil phosphorus availability and maize yields in an alkaline soil

Abstract: This study assessed whether growing cowpea can increase phosphorus (P) availability in the rhizosphere and improve the yield of legume-cereal systems. In alkaline Mediterranean soils with P deficiency, it is assumed that legumes increase inorganic P availability. A field experiment was conducted at the Staoueli experimental station, in Algiers province, Algeria, to compare the growth, grain yield, P availability, and P uptake by plants with sole-cropped cowpea (Vigna unguiculata L. cv. Moh Ouali) and maize (Zea mays L. cv. ILT), intercropped cowpea-maize, and fallow. P availability in the rhizosphere was increased in both sole cropping and intercropping systems compared with fallow. It was highest in intercropping. The increase in P availability was associated with (i) significant pH changes of the rhizosphere of cowpea in sole cropping and intercropping systems, with the rhizosphere acidification significantly higher in intercropping (−0.73 units) than in sole cropping (−0.42 units); (ii) significant increase in the rhizosphere pH of intercropped maize (+0.49 units) compared to fallow; (iii) increased soil respiration (C-CO2 from microbial and root activity) in intercropping compared with sole cropping and fallow; and (iv) higher efficiency in utilization of the rhizobial symbiosis in intercropping than in sole-cropped cowpea. With cowpea-maize intercropping, cowpea increased the P uptake, by increasing the P availability by rhizosphere pH changes in an alkaline soil. Overall, this study showed that intercropping cowpea improved the plant biomass and grain yield of maize in this soil.

Effects of biochar amendment on root traits and contaminant availability of maize plants in a copper and arsenic impacted soil

Abstract: Biochar has been proposed as a tool to enhance phytostabilisation of contaminated soils but little data are available to illustrate the direct effect on roots in contaminated soils. This work aimed to investigate specific root traits and to assess the effect of biochar amendment on contaminant availability. Amendment with two different types of biochar, pine woodchip and olive tree pruning, was assessed in a rhizobox experiment with maize planted in a soil contaminated with significant levels of copper and arsenic. Amendment was found to significantly improve root traits compared to the control soil, particularly root mass density and root length density. Copper uptake to plants and ammonium sulphate extractable copper was significantly less in the biochar amended soils. Arsenic uptake and extractability varied with type of biochar used but was not considered to be the limiting factor affecting root and shoot development. Root establishment in contaminated soils can be enhanced by biochar amendment but choice of biochar is key to maximising soil improvement and controlling contaminant availability.