C
Carl W. Fuller
Researcher at Columbia University
Publications - 8
Citations - 735
Carl W. Fuller is an academic researcher from Columbia University. The author has contributed to research in topics: Nanopore & DNA polymerase. The author has an hindex of 6, co-authored 8 publications receiving 697 citations. Previous affiliations of Carl W. Fuller include Hoffmann-La Roche.
Papers
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Journal ArticleDOI
Fluorescence energy transfer dye-labeled primers for DNA sequencing and analysis
TL;DR: Fluorescent dye-labeled DNA primers have been developed that exploit fluorescence energy transfer (ET) to optimize the absorption and emission properties of the label and should be generally useful in the development of other multiplex DNA sequencing and analysis methods.
Journal ArticleDOI
Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array
Carl W. Fuller,Shiv Kumar,Mintu Porel,Minchen Chien,Arek Bibillo,P. Benjamin Stranges,Michael Dorwart,Chuanjuan Tao,Zengmin Li,Wenjing Guo,Shundi Shi,Daniel Korenblum,Andrew Trans,Anne Aguirre,Edward Shian Liu,Eric Takeshi Harada,James Pollard,Ashwini Bhat,Cynthia Cech,Alexander Yang,Cleoma Arnold,Mirko Palla,Jennifer Hovis,Roger Chen,Irina Morozova,Sergey Kalachikov,James J. Russo,John J. Kasianowicz,Randy Davis,Stefan Roever,George M. Church,Jingyue Ju +31 more
TL;DR: A single-molecule nanopore-based sequencing by synthesis approach that accurately distinguishes four DNA bases by electronically detecting and differentiating four different polymer tags attached to the terminal phosphate of the nucleotides during their incorporation into a growing DNA strand in the polymerase reaction is demonstrated.
Journal ArticleDOI
Design and Synthesis of Fluorescence Energy Transfer Dye-Labeled Primers and Their Application for DNA Sequencing and Analysis
Jingyue Ju,Indu Kheterpal,James R. Scherer,C.C. Ruan,Carl W. Fuller,Alexander N. Glazer,Richard A. Mathies +6 more
TL;DR: The increased fluorescence intensity of the ET primers and the substantially similar mobilities of the DNA fragments generated with the four ET primer allow four-color DNA sequencing on a capillary electrophoresis DNA sequencer using a single laser line at 488 nm for excitation and without applying mobility shift adjustments.
Journal ArticleDOI
Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array
P. Benjamin Stranges,Mirko Palla,Sergey Kalachikov,Jeff Nivala,Michael Dorwart,Andrew Trans,Shiv Kumar,Mintu Porel,Minchen Chien,Chuanjuan Tao,Irina Morozova,Zengmin Li,Shundi Shi,Aman S. Aberra,Cleoma Arnold,Alexander Yang,Anne Aguirre,Eric Takeshi Harada,Daniel Korenblum,James Pollard,Ashwini Bhat,Dmitriy Gremyachinskiy,Arek Bibillo,Roger Chen,Randy Davis,James J. Russo,Carl W. Fuller,Stefan Roever,Jingyue Ju,George M. Church +29 more
TL;DR: The design and characterization of a DNA polymerase–nanopore protein construct on an integrated chip incorporates all four tagged nucleotides and distinguishes single–tagged-nucleotide addition in real time, and is observed during polymerase-catalyzed DNA synthesis.
Patent
Chemical methods for producing tagged nucleotides
TL;DR: In this paper, a disdosure of a tagged nudeotide is described, comprising a polyphosphate moiety having a terminal phosphate and a tag covalently coupled to the terminal phosphate of the nudeotide by a triazole, a 1,2-diazine, a disulfide, a secondary amine, hydrazone, a thio-acetamide, or a maleimide-thioadduct.