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Carsten Marr
Researcher at Technische Universität München
Publications - 146
Citations - 4000
Carsten Marr is an academic researcher from Technische Universität München. The author has contributed to research in topics: Computer science & Deep learning. The author has an hindex of 27, co-authored 115 publications receiving 2904 citations. Previous affiliations of Carsten Marr include Helmholtz Zentrum München & Jacobs University Bremen.
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Journal ArticleDOI
destiny: diffusion maps for large-scale single-cell data in R.
TL;DR: This work exemplarily applies destiny, an efficient R implementation of the diffusion map algorithm, to a recent time-resolved mass cytometry dataset of cellular reprogramming and presents an efficient nearest-neighbour approximation.
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A BaSiC tool for background and shading correction of optical microscopy images.
Tingying Peng,Kurt S. Thorn,Timm Schroeder,Lichao Wang,Fabian J. Theis,Carsten Marr,Nassir Navab,Nassir Navab +7 more
TL;DR: BaSiC, an image correction method based on low-rank and sparse decomposition which solves both shading in space and background variation in time and can correct temporal drift in time-lapse microscopy data and thus improve continuous single-cell quantification.
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Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios.
Philipp S. Hoppe,Michael Schwarzfischer,Dirk Loeffler,Konstantinos D. Kokkaliaris,Oliver Hilsenbeck,Nadine Moritz,Max Endele,Adam Filipczyk,Adriana Gambardella,Nouraiz Ahmed,Martin Etzrodt,Daniel L. Coutu,Michael A. Rieger,Carsten Marr,Michael Strasser,Bernhard Schauberger,Ingo Burtscher,Olga Ermakova,Antje Bürger,Heiko Lickert,Claus Nerlov,Claus Nerlov,Fabian J. Theis,Timm Schroeder +23 more
TL;DR: The findings suggest that these transcription factors are only executing and reinforcing lineage choice once made, challenging the current prevailing model of early myeloid lineage choice.
Journal ArticleDOI
Social transfer of pathogenic fungus promotes active immunisation in ant colonies
Matthias Konrad,Meghan L. Vyleta,Fabian J. Theis,Miriam Stock,Simon Tragust,Martina Klatt,Verena Drescher,Carsten Marr,Line V. Ugelvig,Sylvia Cremer +9 more
TL;DR: These micro-infections promote pathogen-specific immune gene expression and protective immunization of nest-mates, causing low-level infections in fungus-exposed ants.
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Software tools for single-cell tracking and quantification of cellular and molecular properties
Oliver Hilsenbeck,Michael Schwarzfischer,Stavroula Skylaki,Bernhard Schauberger,Philipp S. Hoppe,Dirk Loeffler,Konstantinos D. Kokkaliaris,Simon Hastreiter,Eleni Skylaki,Adam Filipczyk,Michael Strasser,Felix Buggenthin,Justin Feigelman,Jan Krumsiek,Adrianus J J van den Berg,Max Endele,Martin Etzrodt,Carsten Marr,Fabian J. Theis,Timm Schroeder +19 more
TL;DR: Software tools for single-cell tracking and quantification of cellular and molecular properties and their applications in medicine, agriculture, and materials science.