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Charlie Beirnaert
Researcher at University of Antwerp
Publications - 18
Citations - 422
Charlie Beirnaert is an academic researcher from University of Antwerp. The author has contributed to research in topics: Epitope & Metabolomics. The author has an hindex of 9, co-authored 18 publications receiving 277 citations.
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Journal ArticleDOI
Asymmetric dyes align inside carbon nanotubes to yield a large nonlinear optical response
Sofie Cambré,Jochen Campo,Charlie Beirnaert,Christof C. W. Verlackt,Pegie Cool,Wim Wenseleers +5 more
TL;DR: By including an elongated dipolar dye (p,p'-dimethylaminonitrostilbene, DANS, a prototypical asymmetric dye with a strong NLO response) inside single-walled carbon nanotubes (SWCNTs), an ideal head-to-tail alignment in which all electric dipoles point in the same sense is naturally created.
Journal ArticleDOI
The use of plasma donor-derived, cell-free DNA to monitor acute rejection after kidney transplantation.
Els M. Gielis,Kristien J. Ledeganck,Amélie Dendooven,Pieter Meysman,Charlie Beirnaert,Kris Laukens,Joachim De Schrijver,Steven Van Laecke,Wim Van Biesen,Marie-Paule Emonds,Benedicte Y. De Winter,Jean-Louis Bosmans,Jurgen Del Favero,Daniel Abramowicz +13 more
TL;DR: Although increases in plasma ddcfDNA% are associated with graft injury, plasma ddCFDNA does not outperform the diagnostic capacity of the serum creatinine in the diagnosis of acute rejection.
Journal ArticleDOI
On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition
Nicolas De Neuter,Wout Bittremieux,Charlie Beirnaert,Bart Cuypers,Bart Cuypers,Aida Mrzic,Pieter Moris,Arvid Suls,Viggo F I Van Tendeloo,Benson Ogunjimi,Kris Laukens,Pieter Meysman +11 more
TL;DR: A classification approach based on random forest classifiers to predict recognition of a peptide by a T cell receptor and discover patterns that contribute to recognition is developed and serves as a proof of concept for the prediction of immunogenic T cell epitopes and paves the way for more general and high-performing models.
Journal ArticleDOI
Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay
Els M. Gielis,Charlie Beirnaert,Amélie Dendooven,Pieter Meysman,Kris Laukens,Joachim De Schrijver,Steven Van Laecke,Wim Van Biesen,Marie-Paule Emonds,Benedicte Y. De Winter,Jean-Louis Bosmans,Jurgen Del Favero,Daniel Abramowicz,Kristien J. Ledeganck +13 more
TL;DR: Investigating the kinetics of this biomarker after transplantation and determining biological variables that influence ddcfDNA kinetics in stable and non-stable patients found it necessary to quantify ddcf DNA levels in plasma of kidney transplant recipients to investigate the role of ddCFDNA for rejection monitoring of the graft.
Journal ArticleDOI
speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.
Charlie Beirnaert,Pieter Meysman,Trung Nghia Vu,Nina Hermans,Sandra Apers,Luc Pieters,Adrian Covaci,Kris Laukens +7 more
TL;DR: This completely revised framework to automatically analyze 1D NMR spectra uses wavelets to efficiently summarize the raw spectra with minimal information loss or user interaction and is distributed through the existing speaq R package to provide a complete solution for NMR data processing.