C
Christopher I. Bayly
Researcher at OpenEye Scientific Software
Publications - 89
Citations - 29758
Christopher I. Bayly is an academic researcher from OpenEye Scientific Software. The author has contributed to research in topics: Molecular dynamics & Cathepsin K. The author has an hindex of 31, co-authored 87 publications receiving 27257 citations. Previous affiliations of Christopher I. Bayly include Merck & Co. & United States Military Academy.
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Journal ArticleDOI
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
Wendy D. Cornell,Piotr Cieplak,Piotr Cieplak,Christopher I. Bayly,Christopher I. Bayly,Ian R. Gould,Ian R. Gould,Kenneth M. Merz,Kenneth M. Merz,David M. Ferguson,David M. Ferguson,David C. Spellmeyer,David C. Spellmeyer,Thomas R. Fox,James W. Caldwell,Peter A. Kollman +15 more
TL;DR: Weiner et al. as mentioned in this paper derived a new molecular mechanical force field for simulating the structures, conformational energies, and interaction energies of proteins, nucleic acids, and many related organic molecules in condensed phases.
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A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model
TL;DR: In this paper, the authors present an approach to generate electrostatic potential (ESP) derived charges for molecules, which optimally reproduce the intermolecular interaction properties of molecules with a simple two-body additive potential, provided that a suitably accurate level of quantum mechanical calculation is used to derive the ESP around the molecule.
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Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation
TL;DR: The parameters presented here for use with the AM1‐BCC method present a fast, accurate, and robust alternative to HF/6‐31G* ESP‐fit charges for general use withThe AMBER force field in computer simulations involving organic small molecules.
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Fast, efficient generation of high‐quality atomic charges. AM1‐BCC model: I. Method
TL;DR: The AM1-BCC method as mentioned in this paper was proposed to generate high-quality atomic charges for use in condensed-phase simulations, where the underlying features of the electron distribution including formal charge and delocalization are first captured by AM1 atomic charge for the individual molecule.
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Application of RESP charges to calculate conformational energies, hydrogen bond energies, and free energies of solvation
TL;DR: In this article, a two-stage electrostatic potential fit charge model (two-stage RESP) was applied to conformational analysis and the calculation of intermolecular interactions.