C
Cindy Lou Chepanoske
Researcher at Massachusetts Institute of Technology
Publications - 6
Citations - 521
Cindy Lou Chepanoske is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Druggability & Protein–protein interaction. The author has an hindex of 5, co-authored 6 publications receiving 477 citations.
Papers
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Journal ArticleDOI
Huntingtin interacting proteins are genetic modifiers of neurodegeneration.
Linda S. Kaltenbach,Eliana Romero,Robert R. Becklin,Rakesh Chettier,Russell Bell,Amit Phansalkar,Andrew D. Strand,Cameron Torcassi,Justin Savage,Anthony Hurlburt,Guang Ho Cha,Lubna Ukani,Cindy Lou Chepanoske,Yuejun Zhen,Sudhir Sahasrabudhe,James M. Olson,Cornelia Kurschner,Lisa M. Ellerby,John M. Peltier,Juan Botas,Robert E. Hughes +20 more
TL;DR: It is demonstrated that high-throughput screening for protein interactions combined with genetic validation in a model organism is a powerful approach for identifying novel candidate modifiers of polyglutamine toxicity.
Journal ArticleDOI
Ampicillin/penicillin-binding protein interactions as a model drug-target system to optimize affinity pull-down and mass spectrometric strategies for target and pathway identification.
Moritz von Rechenberg,Brian Kelly Blake,Yew-Seng J. Ho,Yuejun Zhen,Cindy Lou Chepanoske,Bonnie Richardson,Nafei Xu,Vladimir Kery +7 more
TL;DR: A drug‐target system consisting of ampicillin‐ and penicillin‐binding proteins (PBPs) to evaluate and compare different amino‐reactive resins for the immobilization of the affinity compound and mass spectrometric methods to identify proteins from drug affinity pull‐down assays is investigated.
Journal ArticleDOI
Average peptide score: a useful parameter for identification of proteins derived from database searches of liquid chromatography/tandem mass spectrometry data.
TL;DR: A trend is observed in a simple relationship, derived from standard database search outputs, which can be useful in assessing the quality of a MS/MS-based protein identification, and the ratio of the protein score and number of non-redundant peptides, or average peptide score (APS), can facilitate initial filtering of database search results.
Patent
Quinoxaline derivatives as antitumor agents
Robert R. Becklin,Cindy Lou Chepanoske,John M. Pelter,Longwu Qi,Paul B. Robbins,Sudhir R. Sahasrabudhe,Robert Selliah,Keith Simmons,Brent R. Stockwell,Raj Gopal Venkat,Rechenberg Moritz Von,Eugene Zhen +11 more
TL;DR: In this paper, the authors proposed methods of screening for binding partners, especially binding partners essential for the biological activity of erastin (e.g. VDACs).
Journal ArticleDOI
An integrated strategy for the discovery of drug targets by the analysis of protein–protein interactions
John M. Peltier,Srdjan Askovic,Robert R. Becklin,Cindy Lou Chepanoske,Yew-Seng J. Ho,Vladimir Kery,Shuping Lai,Tahmina Mujtaba,Mike Pyne,Paul B. Robbins,Moritz von Rechenberg,Bonnie Richardson,Justin Savage,Peter J. Sheffield,Sam Thompson,Lawrence Weir,Kartika Widjaja,Nafei Xu,Yuejun Zhen,J. Jay Boniface +19 more
TL;DR: A multi-step process for the discovery of protein–protein interactions is described and it is shown that process stages are interdependent and can influence, either positively or negatively, subsequent steps.