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Colin Blackburn
Researcher at University of Dundee
Publications - 5
Citations - 560
Colin Blackburn is an academic researcher from University of Dundee. The author has contributed to research in topics: Data management & Metadata. The author has an hindex of 4, co-authored 5 publications receiving 397 citations.
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Journal ArticleDOI
OMERO: flexible, model-driven data management for experimental biology
Chris Allan,Jean-Marie Burel,Josh Moore,Colin Blackburn,Melissa Linkert,Scott Loynton,Donald MacDonald,William J. Moore,Carlos H. Neves,Andrew J. Patterson,Michael Porter,Aleksandra Tarkowska,Brian Loranger,Jerome Avondo,Ingvar Lagerstedt,Luca Lianas,Simone Leo,Katherine Hands,Ronald T. Hay,Ardan Patwardhan,Christoph Best,Christoph Best,Gerard J. Kleywegt,Gianluigi Zanetti,Jason R. Swedlow +24 more
TL;DR: OMERO is a software platform that enables access to and use of a wide range of biological data, and its design and flexibility have enabled its use for light- microscopy, high-content-screening, electron-microscopy and even non-image-genotype data.
Journal ArticleDOI
Metadata management for high content screening in OMERO.
Simon Li,Sébastien Besson,Colin Blackburn,Mark Carroll,Richard K. Ferguson,Helen Flynn,Kenneth Gillen,Roger Leigh,Dominik Lindner,Melissa Linkert,William J. Moore,B. Ramalingam,E. Rozbicki,Gabriella Rustici,Aleksandra Tarkowska,Petr Walczysko,Eleanor Williams,Chris Allan,Jean-Marie Burel,Josh Moore,Jason R. Swedlow +20 more
TL;DR: Repositories integrating multiple image-based studies provide tests of the value of data integration and OMERO and Bio-Formats are open-source tools for data access and management at scale.
Journal ArticleDOI
Publishing and sharing multi-dimensional image data with OMERO
Jean-Marie Burel,Sébastien Besson,Colin Blackburn,Mark Carroll,Richard K. Ferguson,Helen Flynn,Kenneth Gillen,Roger Leigh,Simon Li,Dominik Lindner,Melissa Linkert,William J. Moore,B. Ramalingam,E. Rozbicki,Aleksandra Tarkowska,Petr Walczysko,Chris Allan,Josh Moore,Jason R. Swedlow +18 more
TL;DR: The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL.
Proceedings ArticleDOI
OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale
Josh Moore,Melissa Linkert,Colin Blackburn,Mark Carroll,Richard K. Ferguson,Helen Flynn,Kenneth Gillen,Roger Leigh,Simon Li,Dominik Lindner,William J. Moore,Andrew J. Patterson,Blazej Pindelski,B. Ramalingam,E. Rozbicki,Aleksandra Tarkowska,Petr Walczysko,Chris Allan,Jean-Marie Burel,Jason R. Swedlow +19 more
TL;DR: New versions of Bio-Formats and OMERO are described that are specifically designed to support large, multi-gigabyte or terabyte scale datasets that are routinely collected across most domains of biological and biomedical research.
Proceedings ArticleDOI
The Open Microscopy Environment: open image informatics for the biological sciences
Colin Blackburn,Chris Allan,Sébastien Besson,Jean-Marie Burel,Mark Carroll,Richard K. Ferguson,Helen Flynn,David Gault,Kenneth Gillen,Roger Leigh,Simone Leo,Simon Li,Dominik Lindner,Melissa Linkert,Josh Moore,William J. Moore,B. Ramalingam,E. Rozbicki,Gabriella Rustici,Aleksandra Tarkowska,Petr Walczysko,Eleanor Williams,Jason R. Swedlow +22 more
TL;DR: OMERO’s model-based architecture has enabled its extension into a range of imaging domains, including light and electron microscopy, high content screening, digital pathology and recently into applications using non-image data from clinical and genomic studies.