J
Jean-Marie Burel
Researcher at University of Dundee
Publications - 17
Citations - 1807
Jean-Marie Burel is an academic researcher from University of Dundee. The author has contributed to research in topics: File format & Metadata. The author has an hindex of 9, co-authored 15 publications receiving 1316 citations.
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Journal ArticleDOI
Metadata matters: access to image data in the real world
Melissa Linkert,Curtis Rueden,Chris Allan,Jean-Marie Burel,William J. Moore,Andrew J. Patterson,Brian Loranger,Josh Moore,Carlos H. Neves,Donald MacDonald,Aleksandra Tarkowska,J Caitlin Sticco,Emma Hill,Mike Rossner,Kevin W. Eliceiri,Jason R. Swedlow +15 more
TL;DR: An open standard format for multidimensional microscopy image data is described and it is called on the community to use open image data standards and to insist that all imaging platforms support these file formats.
Journal ArticleDOI
OMERO: flexible, model-driven data management for experimental biology
Chris Allan,Jean-Marie Burel,Josh Moore,Colin Blackburn,Melissa Linkert,Scott Loynton,Donald MacDonald,William J. Moore,Carlos H. Neves,Andrew J. Patterson,Michael Porter,Aleksandra Tarkowska,Brian Loranger,Jerome Avondo,Ingvar Lagerstedt,Luca Lianas,Simone Leo,Katherine Hands,Ronald T. Hay,Ardan Patwardhan,Christoph Best,Christoph Best,Gerard J. Kleywegt,Gianluigi Zanetti,Jason R. Swedlow +24 more
TL;DR: OMERO is a software platform that enables access to and use of a wide range of biological data, and its design and flexibility have enabled its use for light- microscopy, high-content-screening, electron-microscopy and even non-image-genotype data.
Journal ArticleDOI
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
Ilya G. Goldberg,Chris Allan,Jean-Marie Burel,Doug Creager,Andrea Falconi,Harry Hochheiser,Josiah Johnston,Jeff Mellen,Peter K. Sorger,Jason R. Swedlow +9 more
TL;DR: The OME Data Model, expressed in Extensible Markup Language (XML) and realized in a traditional database, is both extensible and self-describing, allowing it to meet emerging imaging and analysis needs.
Journal ArticleDOI
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.
Josh Moore,Chris Allan,Sébastien Besson,Jean-Marie Burel,Erin Diel,David Gault,Kevin Kozlowski,Dominik Lindner,Melissa Linkert,Trevor Manz,William J. Moore,Constantin Pape,Christian Tischer,Jason R. Swedlow +13 more
TL;DR: In this paper, the authors propose that complementing established open formats such as OME-TIFF and HDF5 with a next-generation file format such as Zarr will satisfy the majority of use cases in bioimaging.
Journal ArticleDOI
Metadata management for high content screening in OMERO.
Simon Li,Sébastien Besson,Colin Blackburn,Mark Carroll,Richard K. Ferguson,Helen Flynn,Kenneth Gillen,Roger Leigh,Dominik Lindner,Melissa Linkert,William J. Moore,B. Ramalingam,E. Rozbicki,Gabriella Rustici,Aleksandra Tarkowska,Petr Walczysko,Eleanor Williams,Chris Allan,Jean-Marie Burel,Josh Moore,Jason R. Swedlow +20 more
TL;DR: Repositories integrating multiple image-based studies provide tests of the value of data integration and OMERO and Bio-Formats are open-source tools for data access and management at scale.