D
Dan B. Kristensen
Publications - 5
Citations - 5700
Dan B. Kristensen is an academic researcher. The author has contributed to research in topics: Chemistry & Peptide. The author has an hindex of 3, co-authored 3 publications receiving 5426 citations.
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Journal ArticleDOI
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
Shao En Ong,Blagoy Blagoev,Irina Kratchmarova,Dan B. Kristensen,Hanno Steen,Akhilesh Pandey,Matthias Mann +6 more
TL;DR: SILAC is a simple, inexpensive, and accurate procedure that can be used as a quantitative proteomic approach in any cell culture system and is applied to the relative quantitation of changes in protein expression during the process of muscle cell differentiation.
Journal ArticleDOI
Experimental Peptide Identification Repository (EPIR) An Integrated Peptide-Centric Platform for Validation and Mining of Tandem Mass Spectrometry Data
Dan B. Kristensen,Jan Christian Brønd,Peter A Nielsen,Jens R. Andersen,Ole Tang Sørensen,Vibeke Jørgensen,Kenneth Budin,Jesper Matthiesen,Peter Venø,Hans Jespersen,Christian H. Ahrens,Soeren Schandorff,Peder Thusgaard Ruhoff,Jacek R. Wisniewski,Keiryn L. Bennett,Alexandre V. Podtelejnikov +15 more
TL;DR: Emphasis is placed on the key strengths of EPIR, including the ability to validate and mine multiple combined datasets, and presentation of protein-level evidence in concise, nonredundant protein groups that are based on shared peptide evidence.
Journal ArticleDOI
Optimized Multi-Attribute Method Workflow Addressing Missed Cleavages and Chromatographic Tailing/Carry-Over of Hydrophobic Peptides
Dan B. Kristensen,Martin Ørgaard,Trine Meiborg Sloth,Nanna S Christoffersen,Katrine Zinck Leth-Espensen,Pernille F Jensen +5 more
TL;DR: In this paper , a modified peptide mapping workflow with an automatic digestion step is presented, which includes a two-step digestion at high and low temperatures, as opposed to the original one-stage digestion at a high temperature.
Journal ArticleDOI
Analysis of large-scale MS data sets: the dramas and the delights
Keiryn L. Bennett,Jan Christian Brønd,Dan B. Kristensen,Alexandre V. Podtelejnikov,Jacek R. Wisniewski +4 more
TL;DR: The issues that arise when analysing large quantities of data generated by liquid chromatography mass spectrometry are reviewed, potential solutions for data management and the future direction of large-scale data analysis by mass spectromaetry are predicted.
Journal ArticleDOI
Overcoming Incomplete Peptide Mapping of Antibody Complementarity-Determining Regions with Alternate Digestion Workflows
TL;DR: In this article , pepsin can be used as an alternative and complementary protease for digestion that allows for improved sequence coverage, especially in proteins with highly hydrophobic regions.