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https://www.tau.ac.il/%7Eklafter1/258.pdf

The random walk's guide to anomalous diffusion: a fractional dynamics approach

Stochastic thermodynamics as reviewed here systematically provides a framework for extending the notions of classical thermodynamics such as work, heat and entropy production to the level of individual trajectories of well-defined non-equilibrium ensembles. It applies whenever a non-equilibrium process is still coupled to one (or several) heat bath(s) of constant temperature. Paradigmatic systems are single colloidal particles in time-dependent laser traps, polymers in external flow, enzymes and molecular motors in single molecule assays, small biochemical networks and thermoelectric devices involving single electron transport. For such systems, a first-law like energy balance can be identified along fluctuating trajectories. For a basic Markovian dynamics implemented either on the continuum level with Langevin equations or on a discrete set of states as a master equation, thermodynamic consistency imposes a local-detailed balance constraint on noise and rates, respectively. Various integral and detailed fluctuation theorems, which are derived here in a unifying approach from one master theorem, constrain the probability distributions for work, heat and entropy production depending on the nature of the system and the choice of non-equilibrium conditions. For non-equilibrium steady states, particularly strong results hold like a generalized fluctuation–dissipation theorem involving entropy production. Ramifications and applications of these concepts include optimal driving between specified states in finite time, the role of measurement-based feedback processes and the relation between dissipation and irreversibility. Efficiency and, in particular, efficiency at maximum power can be discussed systematically beyond the linear response regime for two classes of molecular machines, isothermal ones such as molecular motors, and heat engines such as thermoelectric devices, using a common framework based on a cycle decomposition of entropy production. (Some figures may appear in colour only in the online journal) This article was invited by Erwin Frey.

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Stochastic thermodynamics, fluctuation theorems and molecular machines

Fractional dynamics has experienced a firm upswing during the past few years, having been forged into a mature framework in the theory of stochastic processes. A large number of research papers developing fractional dynamics further, or applying it to various systems have appeared since our first review article on the fractional Fokker–Planck equation (Metzler R and Klafter J 2000a, Phys. Rep. 339 1–77). It therefore appears timely to put these new works in a cohesive perspective. In this review we cover both the theoretical modelling of sub- and superdiffusive processes, placing emphasis on superdiffusion, and the discussion of applications such as the correct formulation of boundary value problems to obtain the first passage time density function. We also discuss extensively the occurrence of anomalous dynamics in various fields ranging from nanoscale over biological to geophysical and environmental systems.

/pdf/the-restaurant-at-the-end-of-the-random-walk-recent-1w7yr3snyb.pdf

The restaurant at the end of the random walk: recent developments in the description of anomalous transport by fractional dynamics

Our aim is to propose a theory which goes beyond the classical formulation of thermodynamics. This is achieved by enlarging the space of basic independent variables, through the introduction of non-equilibrium variables, such as the dissipative fluxes appearing in the balance equations. The next step is to find evolution equations for the dissipative fluxes. Whereas the evolution equations for the classical variables are given by the usual balance laws, no general criteria exist concerning the evolution equations of the dissipative fluxes, with the exception of the restrictions imposed on them by the second law of thermodynamics.

https://iopscience.iop.org/article/10.1088/0034-4885/51/8/002/pdf

Extended irreversible thermodynamics

/pdf/understanding-non-equilibrium-thermodynamics-4cgd88va3s.pdf

Understanding Non-equilibrium Thermodynamics

REVIEW ARTICLE: Extended irreversible thermodynamics

The conceptual problems arising in the definition and measurement of temperature in non-equilibrium states are discussed in this paper in situations where the local-equilibrium hypothesis is no longer satisfactory. This is a necessary and urgent discussion because of the increasing interest in thermodynamic theories beyond local equilibrium, in computer simulations, in non-linear statistical mechanics, in new experiments, and in technological applications of nanoscale systems and material sciences. First, we briefly review the concept of temperature from the perspectives of equilibrium thermodynamics and statistical mechanics. Afterwards, we explore which of the equilibrium concepts may be extrapolated beyond local equilibrium and which of them should be modified, then we review several attempts to define temperature in non-equilibrium situations from macroscopic and microscopic bases. A wide review of proposals is offered on effective non-equilibrium temperatures and their application to ideal and real gases, electromagnetic radiation, nuclear collisions, granular systems, glasses, sheared fluids, amorphous semiconductors and turbulent fluids. The consistency between the different relativistic transformation laws for temperature is discussed in the new light gained from this perspective. A wide bibliography is provided in order to foster further research in this field.

/pdf/temperature-in-non-equilibrium-states-a-review-of-open-2vvmx2wgla.pdf

Temperature in non-equilibrium states: a review of open problems and current proposals

We review the progress made in extended irreversible thermodynamics during the ten years that have elapsed since the publication of our first review on the same subject (Rep. Frog. Phys. 1988 51 1105-72). During this decade much effort has been devoted to achieving a better understanding of the fundamentals and a broadening of the domain of applications. The macroscopic formulation of extended irreversible thermodynamics is reviewed and compared with other non-equilibrium thermodynamic theories. The foundations of EIT are discussed on the bases of information theory, kinetic theory, stochastic phenomena and computer simulations. Several significant applications are presented, some of them of considerable practical interest (non-classical heat transport, polymer solutions, non-Fickian diffusion, microelectronic devices, dielectric relaxation), and some others of special theoretical appeal (superfluids, nuclear collisions, cosmology). We also outline some basic problems which are not yet completely solved, such as the definitions of entropy and temperature out of equilibrium, the selection of the relevant variables, and the status to be reserved to the H-theorem and its relation to the second law. In writing this review, we had four objectives in mind: to show (i) that extended irreversible thermodynamics stands at the frontiers of modern thermodynamics; (ii) that it opens the way to new and useful applications; (iii) that much progress has been achieved during the last decade, and (iv) that the subject is far from being exhausted.

https://iopscience.iop.org/article/10.1088/0034-4885/62/7/201/pdf

David Jou

Papers

Extended irreversible thermodynamics

Understanding Non-equilibrium Thermodynamics

REVIEW ARTICLE: Extended irreversible thermodynamics

Temperature in non-equilibrium states: a review of open problems and current proposals

Extended irreversible thermodynamics revisited (1988-98)