D
Dayté D Rodríguez
Researcher at Spanish National Research Council
Publications - 9
Citations - 336
Dayté D Rodríguez is an academic researcher from Spanish National Research Council. The author has contributed to research in topics: Protein Data Bank & Phase problem. The author has an hindex of 6, co-authored 9 publications receiving 302 citations.
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Journal ArticleDOI
Crystallographic ab initio protein structure solution below atomic resolution
Dayté D Rodríguez,Christian Grosse,Sebastian Himmel,César González,Iñaki M. de Ilarduya,Stefan Becker,George M. Sheldrick,Isabel Usón +7 more
TL;DR: A general ab initio phasing method for 2 Å data is described, based on combination of localizing model fragments such as small á-helices with Phaser and density modification with SHELXE.
Journal ArticleDOI
Exploiting tertiary structure through local folds for crystallographic phasing
Massimo Sammito,Claudia Millán,Dayté D Rodríguez,Iñaki M. de Ilarduya,Kathrin Meindl,Ivan De Marino,Giovanna Petrillo,Rubén M. Buey,José M. de Pereda,Kornelius Zeth,George M. Sheldrick,Isabel Usón +11 more
TL;DR: An algorithm for phasing protein crystal X-ray diffraction data that identifies, retrieves, refines and exploits general tertiary structural information from small fragments available in the Protein Data Bank is described.
Journal ArticleDOI
Practical structure solution with ARCIMBOLDO
Dayté D Rodríguez,Massimo Sammito,Kathrin Meindl,Iñaki M. de Ilarduya,Marianus Potratz,George M. Sheldrick,Isabel Usón +6 more
TL;DR: ARCIMBOLDO combines the location of small fragments with Phaser and density modification with SHELXE of all possible Phaser solutions.
Journal ArticleDOI
The crystal structure of the dimeric colicin M immunity protein displays a 3D domain swap
TL;DR: Although the Cmi-Cma complex is unique among bacteria, the general fold of Cmi is representative for a class of YebF-like proteins which are known to be secreted into the external medium by some Gram-negative bacteria.
Journal ArticleDOI
Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin muRF1
Barbara Franke,Alexander Gasch,Dayté D Rodríguez,Mohamed Chami,Muzamil Majid Khan,Rüdiger Rudolf,Jaclyn Bibby,Akira Hanashima,Julijus Bogomolovas,Eleonore von Castelmur,Daniel J. Rigden,Isabel Usón,Siegfried Labeit,Olga Mayans +13 more
TL;DR: The helical region from MuRF1 is characterized and it is shown that, contrary to expectations, its CC domain assembles unproductively, being the B2- and COS-boxes in the fold (respectively flanking the CC) that promote a native quaternary structure.