The microorganisms in biofilms live in a self-produced matrix of hydrated extracellular polymeric substances (EPS) that form their immediate environment. EPS are mainly polysaccharides, proteins, nucleic acids and lipids; they provide the mechanical stability of biofilms, mediate their adhesion to surfaces and form a cohesive, three-dimensional polymer network that interconnects and transiently immobilizes biofilm cells. In addition, the biofilm matrix acts as an external digestive system by keeping extracellular enzymes close to the cells, enabling them to metabolize dissolved, colloidal and solid biopolymers. Here we describe the functions, properties and constituents of the EPS matrix that make biofilms the most successful forms of life on earth.

The biofilm matrix

Antiseptics and disinfectants are extensively used in hospitals and other health care settings for a variety of topical and hard-surface applications A wide variety of active chemical agents (biocides) are found in these products, many of which have been used for hundreds of years, including alcohols, phenols, iodine, and chlorine Most of these active agents demonstrate broad-spectrum antimicrobial activity; however, little is known about the mode of action of these agents in comparison to antibiotics This review considers what is known about the mode of action and spectrum of activity of antiseptics and disinfectants The widespread use of these products has prompted some speculation on the development of microbial resistance, in particular whether antibiotic resistance is induced by antiseptics or disinfectants Known mechanisms of microbial resistance (both intrinsic and acquired) to biocides are reviewed, with emphasis on the clinical implications of these reports

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Antiseptics and Disinfectants: Activity, Action, and Resistance

Bacterial biofilms are formed by communities that are embedded in a self-produced matrix of extracellular polymeric substances (EPS). Importantly, bacteria in biofilms exhibit a set of 'emergent properties' that differ substantially from free-living bacterial cells. In this Review, we consider the fundamental role of the biofilm matrix in establishing the emergent properties of biofilms, describing how the characteristic features of biofilms - such as social cooperation, resource capture and enhanced survival of exposure to antimicrobials - all rely on the structural and functional properties of the matrix. Finally, we highlight the value of an ecological perspective in the study of the emergent properties of biofilms, which enables an appreciation of the ecological success of biofilms as habitat formers and, more generally, as a bacterial lifestyle.

Biofilms: an emergent form of bacterial life.

This book is written as a reference on organic substances in natural waters and as a supplementary text for graduate students in water chemistry. The chapters address five topics: amount, origin, nature, geochemistry, and characterization of organic carbon. Of these topics, the main themes are the amount and nature of dissolved organic carbon in natural waters (mainly fresh water, although seawater is briefly discussed). It is hoped that the reader is familiar with organic chemistry, but it is not necessary. The first part of the book is a general overview of the amount and general nature of dissolved organic carbon. Over the past 10 years there has been an exponential increase in knowledge on organic substances in water, which is the result of money directed toward the research of organic compounds, of new methods of analysis (such as gas chromatography and mass spectrometry), and most importantly, the result of more people working in this field. Because of this exponential increase in knowledge, there is a need to pull together and summarize the data that has accumulated from many disciplines over the last decade.

Organic geochemistry of natural waters

The recent advances in nanotechnology and the corresponding increase in the use of nanomaterials in products in every sector of society have resulted in uncertainties regarding environmental impacts. The objectives of this review are to introduce the key aspects pertaining to nanomaterials in the environment and to discuss what is known concerning their fate, behavior, disposition, and toxicity, with a particular focus on those that make up manufactured nanomaterials. This review critiques existing nanomaterial research in freshwater, marine, and soil environments. It illustrates the paucity of existing research and demonstrates the need for additional research. Environmental scientists are encouraged to base this research on existing studies on colloidal behavior and toxicology. The need for standard reference and testing materials as well as methodology for suspension preparation and testing is also discussed.

Nanomaterials in the environment: Behavior, fate, bioavailability, and effects

Encyclopedia of environmental microbiology , Encyclopedia of environmental microbiology , مرکز فناوری اطلاعات و اطلاع رسانی کشاورزی

Encyclopedia of environmental microbiology

Disinfection due to copper or silver ions may result from action at the cell or capsid protein surface or on the nucleic acid of cells or viruses. Metals may alter enzyme structure and function or facilitate hydrolysis or nucleophilic displacement. The means by which cells may reduce the toxic effect of metal ions include: biomethylation, complexation with metallothionen, development of efflux pumps, the binding of metal ions to cell surfaces, and the removal of metal ions by precipitation. The phenomenon of “multiplicity of reactivation” may reduce the effect of a disinfectant on a virus by allowing a clump of partially inactivated viruses to produce a productive infection in a susceptible cell. Conditions which may affect metal ion‐biomolecule interaction include: pH, ionic strength, temperature, dissolved oxygen, presence of interfering substances or light, the chemical form and valency of the metal ion, and the condition of the microorganisms.

The molecular mechanisms of copper and silver ion disinfection of bacteria and viruses

Experimental conditions that mimic likely scenarios of manufactured nanomaterials (MNs) introduction to aquatic systems were used to assessthe effect of nanoparticle dispersion/solubility and water chemical composition on MN-toxicity. Aqueous suspensions of fullerenes (C60), nanosilver (nAg), and nanocopper (nCu) were prepared in both deionized water and filtered (0.45 microm) natural river water samples collected from the Suwannee River basin, to emphasize differences in dissolved organic carbon (DOC) concentrations and solution ionic strengths (I). Two toxicity tests, the Ceriodaphnia dubia and MetPLATE bioassays were used. Results obtained from exposure studies show that water chemistry affects the suspension/solubility of MNs as well as the particle size distribution, resulting in a wide range of biological responses depending on the type of toxicity test used. Under experimental conditions used in this study, C60 exhibited no toxicity even when suspended concentrations exceeded 3 mg L(-1). MetPLATE results showed that the toxicity of aqueous suspensions of nCu tends to increase with increasing DOC concentrations, while increasing I reduces nCu toxicity. The use of the aquatic invertebrate C. dubia on the other hand showed a tendency for decreased mortality with increasing DOC and I. MetPLATE results for nAg showed decreasing trends in toxicity with increasing DOC concentrations and I. However, C. dubia exhibited contrasting biological responses, in that increasing DOC concentrations reduced toxicity, while the latter increased with increasing I. Overall, our results show that laboratory experiments that use DI-water and drastic MN-suspension methods may not be realistic as MN-dispersion and suspension in natural waters vary significantly with water chemistry and the reactivity of MNs.

Gabriel Bitton

Papers

Encyclopedia of environmental microbiology

The molecular mechanisms of copper and silver ion disinfection of bacteria and viruses

Dispersion and Toxicity of Selected Manufactured Nanomaterials in Natural River Water Samples: Effects of Water Chemical Composition

Heavy metal contamination from mining sites in South Morocco: 2. Assessment of metal accumulation and toxicity in plants

Microbial pollutants: their survival and transport pattern to groundwater.