G
Gregory Bokinsky
Researcher at Delft University of Technology
Publications - 30
Citations - 2802
Gregory Bokinsky is an academic researcher from Delft University of Technology. The author has contributed to research in topics: RNA & Biomass. The author has an hindex of 12, co-authored 28 publications receiving 2643 citations. Previous affiliations of Gregory Bokinsky include University of California & Lawrence Berkeley National Laboratory.
Papers
More filters
Journal ArticleDOI
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
Eric J. Steen,Yisheng Kang,Gregory Bokinsky,Zhihao Hu,Andreas W. Schirmer,Amy McClure,Stephen B. del Cardayre,Jay D. Keasling +7 more
TL;DR: The engineering of Escherichia coli is demonstrated to produce structurally tailored fatty esters (biodiesel), fatty alcohols, and waxes directly from simple sugars, a step towards producing these compounds directly from hemicellulose, a major component of plant-derived biomass.
Journal ArticleDOI
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli
Gregory Bokinsky,Pamela Peralta-Yahya,Pamela Peralta-Yahya,Anthe George,Anthe George,Bradley M. Holmes,Bradley M. Holmes,Eric J. Steen,Eric J. Steen,Jeffrey A. Dietrich,Jeffrey A. Dietrich,Taek Soon Lee,Taek Soon Lee,Danielle Tullman-Ercek,Danielle Tullman-Ercek,Christopher A. Voigt,Blake A. Simmons,Blake A. Simmons,Jay D. Keasling +18 more
TL;DR: The engineered strains express cellulase, xylanase, beta-glucosidase, and xylobiosidase enzymes under control of native E. coli promoters selected to optimize growth on model cellulosic and hemicellulosic substrates and provide an economical route to production of advanced biofuels.
Journal ArticleDOI
Single-molecule transition-state analysis of RNA folding
Gregory Bokinsky,David Rueda,Vinod K. Misra,Maria M. Rhodes,Andrew Gordus,Hazen P. Babcock,Nils G. Walter,Xiaowei Zhuang +7 more
TL;DR: The authors' single-molecule experiments in conjunction with site-specific mutations and metal ion titrations show that the two RNA domains are in a contact or close-to-contact configuration in the transition state even though the native tertiary contacts are at most partially formed, which may be a general property of elementary RNA folding reactions.
Journal ArticleDOI
Dynamic binding orientations direct activity of HIV reverse transcriptase
Elio A. Abbondanzieri,Gregory Bokinsky,Jason W. Rausch,Jennifer X. Zhang,Stuart F. J. Le Grice,Xiaowei Zhuang,Xiaowei Zhuang +6 more
TL;DR: Different orientational dynamics of reverse transcriptase observed on different substrates with a single-molecule assay indicate that the activities of reverse transcripts are determined by its binding orientation on substrates.
Journal ArticleDOI
Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance.
TL;DR: It is proposed that a network of coupled molecular motions connects distant parts of the RNA with its reaction site, which suggests a previously undescribed analogy between RNA and protein enzymes.