Hilda Solano-Lira

TL;DR: The semiautomatic strategy to accelerate curation, including datasets from high-throughput experiments, a novel coexpression distance to search for ‘neighborhood’ genes to known operons and regulons, and computational developments are described.

TL;DR: RegulonDB version 8.0 is a much better home for integrating knowledge on gene regulation from the sources of information currently available, particularly for knowledge generated through high-throughput (HT) technology.

TL;DR: RegulonDB is the primary reference database of the best-known regulatory network of any free-living organism, that of Escherichia coli K-12, and has summaries for every transcription factor and TF-binding sites with internal symmetry.

TL;DR: This work adapted the OntoGene text mining pipeline and the ODIN curation system in a full-text corpus of scientific publications concerning one specific respiratory disease: idiopathic pulmonary fibrosis, and found 246 miRNAs related to this disease based on the semiautomatic approach with the system Onto Gene/ODIN.

TL;DR: Lisen&Curate as discussed by the authors is a curation system that facilitates linking sentences or part of sentences in articles with their corresponding curated objects, so that rich additional information of these objects is easily available to users.