H
Hou Cheng Chu
Researcher at Lawrence Berkeley National Laboratory
Publications - 4
Citations - 1091
Hou Cheng Chu is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Transcription factor & Gene. The author has an hindex of 3, co-authored 4 publications receiving 1061 citations.
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Journal ArticleDOI
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
Xiao-Yong Li,Stewart MacArthur,Richard Bourgon,David A. Nix,Daniel A. Pollard,Venky N. Iyer,Aaron Hechmer,Lisa Simirenko,Mark Stapleton,Cris L. Luengo Hendriks,Hou Cheng Chu,Nobuo Ogawa,William Inwood,Victor Sementchenko,Amy Beaton,Richard Weiszmann,Susan E. Celniker,David W. Knowles,Thomas R. Gingeras,Terence P. Speed,Michael B. Eisen,Mark D. Biggin +21 more
TL;DR: Surprisingly, for five of the six factors, their recognition sites are not unambiguously more constrained evolutionarily than the immediate flanking DNA, even in more highly bound and presumably functional regions, indicating that comparative DNA sequence analysis is limited in its ability to identify functional transcription factor targets.
Journal ArticleDOI
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
Stewart MacArthur,Stewart MacArthur,Xiao-Yong Li,Xiao-Yong Li,Jingyi Li,James B. Brown,Hou Cheng Chu,Lucy Zeng,Brandi P Grondona,Aaron Hechmer,Lisa Simirenko,Soile V.E. Keranen,David W. Knowles,Mark Stapleton,Peter J. Bickel,Mark D. Biggin,Michael B. Eisen,Michael B. Eisen +17 more
TL;DR: It is suggested that most animal transcription factors will be found to show a similar broad overlapping pattern of binding in vivo, with specificity achieved by modulating the amount, rather than the identity, of bound factor.
Journal ArticleDOI
Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species
Robert K. Bradley,Xiao-Yong Li,Xiao-Yong Li,Cole Trapnell,Stuart M. Davidson,Lior Pachter,Hou Cheng Chu,Leath A. Tonkin,Leath A. Tonkin,Mark D. Biggin,Michael B. Eisen +10 more
TL;DR: Genome-wide comparison of transcription factor binding between related Drosophila species highlights how sequence changes affect the biochemical events that underlie animal development.
Journal ArticleDOI
Correction: Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
Xiao-Yong Li,Stewart MacArthur,Richard Bourgon,David A. Nix,Daniel A. Pollard,Venky N. Iyer,Aaron Hechmer,Lisa Simirenko,Mark Stapleton,Cris L. Luengo Hendriks,Hou Cheng Chu,Nobuo Ogawa,William Inwood,Victor Sementchenko,Amy Beaton,Richard Weiszmann,Susan E. Celniker,David W. Knowles,Thomas R. Gingeras,Terence P. Speed,Michael B. Eisen,Mark D. Biggin +21 more
TL;DR: The corrected version of the Table below gives the intended information for the enzyme phosphorylated at the C terminus, which is recognized by the H14 monoclonal antibody.