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Xiao-Yong Li
Researcher at University of California, Berkeley
Publications - 11
Citations - 1323
Xiao-Yong Li is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Maternal to zygotic transition & Chromatin. The author has an hindex of 7, co-authored 8 publications receiving 1147 citations. Previous affiliations of Xiao-Yong Li include Lawrence Berkeley National Laboratory.
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Journal ArticleDOI
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
Stewart MacArthur,Stewart MacArthur,Xiao-Yong Li,Xiao-Yong Li,Jingyi Li,James B. Brown,Hou Cheng Chu,Lucy Zeng,Brandi P Grondona,Aaron Hechmer,Lisa Simirenko,Soile V.E. Keranen,David W. Knowles,Mark Stapleton,Peter J. Bickel,Mark D. Biggin,Michael B. Eisen,Michael B. Eisen +17 more
TL;DR: It is suggested that most animal transcription factors will be found to show a similar broad overlapping pattern of binding in vivo, with specificity achieved by modulating the amount, rather than the identity, of bound factor.
Journal ArticleDOI
Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition.
Melissa M. Harrison,Xiao-Yong Li,Tommy Kaplan,Tommy Kaplan,Michael R. Botchan,Michael B. Eisen,Michael B. Eisen +6 more
TL;DR: Thousands of regions bound by zinc-finger protein Zelda are identified in cycle 8 embryos, suggesting that ZLD is not only required for the earliest wave of transcription but also plays a major role in activating the genome at the MZT.
Journal ArticleDOI
Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species
Robert K. Bradley,Xiao-Yong Li,Xiao-Yong Li,Cole Trapnell,Stuart M. Davidson,Lior Pachter,Hou Cheng Chu,Leath A. Tonkin,Leath A. Tonkin,Mark D. Biggin,Michael B. Eisen +10 more
TL;DR: Genome-wide comparison of transcription factor binding between related Drosophila species highlights how sequence changes affect the biochemical events that underlie animal development.
Journal ArticleDOI
Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition
TL;DR: Early histone acetylation is strongly associated with regions that have been shown to be bound in early embryos by the maternally deposited transcription factor Zelda, suggesting that Zelda triggers a cascade of events, including the accumulation of specific histone modifications, that plays a role in the subsequent activation of these sequences.
Journal ArticleDOI
Dense Bicoid hubs accentuate binding along the morphogen gradient.
Mustafa Mir,Armando Reimer,Jenna E. Haines,Xiao-Yong Li,Michael Stadler,Hernan G. Garcia,Michael B. Eisen,Xavier Darzacq +7 more
TL;DR: It is proposed that localized modulation of transcription factor on rates via clustering provides a general mechanism to facilitate binding to low-affinity targets and that this may be a prevalent feature of other developmental transcription factors.