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Ivo Palli
Researcher at Erasmus University Rotterdam
Publications - 6
Citations - 323
Ivo Palli is an academic researcher from Erasmus University Rotterdam. The author has contributed to research in topics: Whole genome sequencing & Mutation (genetic algorithm). The author has an hindex of 6, co-authored 6 publications receiving 321 citations. Previous affiliations of Ivo Palli include Erasmus University Medical Center.
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CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy
Saskia Hiltemann,Hailiang Mei,Mattias de Hollander,Ivo Palli,Peter J. van der Spek,Guido Jenster,Andrew P. Stubbs +6 more
TL;DR: In this article, the authors have implemented a complete genomics toolkit and annotation in a cloud-based Galaxy, called CGtag (Complete Genomics Toolkit and Annotation in a Cloudbased Galaxy), for the selection of candidate mutations from Complete Genomics data.
Journal Article
CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy : Technical Note
Saskia Hiltemann,Hailiang Mei,Mattias de Hollander,Ivo Palli,Peter J. van der Spek,Guido Jenster,Andrew P. Stubbs +6 more
TL;DR: This work has implemented the open-source Complete Genomics tool set, CGATools, in Galaxy, and implemented some of the most popular command-line annotation and visualisation tools to allow research scientists to select candidate pathological mutations.
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Automated Selection of Hotspots (ASH): enhanced automated segmentation and adaptive step finding for Ki67 hotspot detection in adrenal cortical cancer
Hao Lu,Thomas G. Papathomas,David van Zessen,Ivo Palli,Ronald R. de Krijger,Peter J. van der Spek,Winand N.M. Dinjens,Andrew P. Stubbs +7 more
TL;DR: An open source automated detection quantitative ranking of hotspots to support histopathologists in selecting the `hottest’ hotspot areas in adrenocortical carcinoma.
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Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection
Andrew P. Stubbs,Elizabeth A. McClellan,Sebastiaan Horsman,Saskia Hiltemann,Ivo Palli,Stephan Nouwens,Anton H. Koning,Frits Hoogland,Joke Reumers,Daphne Heijsman,Sigrid M.A. Swagemakers,Andreas Kremer,Jules P.P. Meijerink,Diether Lambrechts,Peter J. van der Spek +14 more
TL;DR: Huvariome is a simple to use resource for validation of resequencing results obtained by NGS experiments and it is demonstrated that Huvariome can provide accurate reference allele frequencies to disambiguate sequencing inconsistencies produced in resequenced experiments.
Journal ArticleDOI
iFUSE: integrated fusion gene explorer
Saskia Hiltemann,Elizabeth A. McClellan,Jos van Nijnatten,Sebastiaan Horsman,Ivo Palli,Ines Teles Alves,Thomas A Hartjes,Jan Trapman,Peter J. van der Spek,Guido Jenster,Andrew P. Stubbs +10 more
TL;DR: iFUSE (integrated fusion gene explorer), an online visualization tool that provides a fast and informative view of structural variation data and prioritizes those breaks likely representing fusion genes, is presented.