抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

https://www2.econ.iastate.edu/tesfatsi/DeepLearningInNeuralNetworksOverview.JSchmidhuber2015.pdf

Deep learning in neural networks

I have developed "tennis elbow" from lugging this book around the past four weeks, but it is worth the pain, the effort, and the aspirin. It is also worth the (relatively speaking) bargain price. Including appendixes, this book contains 894 pages of text. The entire panorama of the neural sciences is surveyed and examined, and it is comprehensive in its scope, from genomes to social behaviors. The editors explicitly state that the book is designed as "an introductory text for students of biology, behavior, and medicine," but it is hard to imagine any audience, interested in any fragment of neuroscience at any level of sophistication, that would not enjoy this book. The editors have done a masterful job of weaving together the biologic, the behavioral, and the clinical sciences into a single tapestry in which everyone from the molecular biologist to the practicing psychiatrist can find and appreciate his or

Principles of Neural Science

In cultures of dissociated rat hippocampal neurons, persistent potentiation and depression of glutamatergic synapses were induced by correlated spiking of presynaptic and postsynaptic neurons. The relative timing between the presynaptic and postsynaptic spiking determined the direction and the extent of synaptic changes. Repetitive postsynaptic spiking within a time window of 20 msec after presynaptic activation resulted in long-term potentiation (LTP), whereas postsynaptic spiking within a window of 20 msec before the repetitive presynaptic activation led to long-term depression (LTD). Significant LTP occurred only at synapses with relatively low initial strength, whereas the extent of LTD did not show obvious dependence on the initial synaptic strength. Both LTP and LTD depended on the activation of NMDA receptors and were absent in cases in which the postsynaptic neurons were GABAergic in nature. Blockade of L-type calcium channels with nimodipine abolished the induction of LTD and reduced the extent of LTP. These results underscore the importance of precise spike timing, synaptic strength, and postsynaptic cell type in the activity-induced modification of central synapses and suggest that Hebb’s rule may need to incorporate a quantitative consideration of spike timing that reflects the narrow and asymmetric window for the induction of synaptic modification.

https://www.jneurosci.org/content/jneuro/18/24/10464.full.pdf

Synaptic Modifications in Cultured Hippocampal Neurons: Dependence on Spike Timing, Synaptic Strength, and Postsynaptic Cell Type

N G van Kampen 1981 Amsterdam: North-Holland xiv + 419 pp price Dfl 180 This is a book which, at a lower price, could be expected to become an essential part of the library of every physical scientist concerned with problems involving fluctuations and stochastic processes, as well as those who just enjoy a beautifully written book. It provides an extensive graduate-level introduction which is clear, cautious, interesting and readable.

https://iopscience.iop.org/article/10.1088/0031-9112/34/4/040/pdf

Stochastic Processes in Physics and Chemistry

A paradox that exists in auditory and electrosensory neural systems is that they encode behaviorally relevant signals in the range of a few microseconds with neurons that are at least one order of magnitude slower. The importance of temporal coding in neural information processing is not clear yet. A central question is whether neuronal firing can be more precise than the time constants of the neuronal processes involved. Here we address this problem using the auditory system of the barn owl as an example. We present a modelling study based on computer simulations of a neuron in the laminar nucleus. Three observations explain the paradox. First, spiking of an 'integrate-and-fire' neuron driven by excitatory postsynaptic potentials with a width at half-maximum height of 250 micros, has an accuracy of 25 micros if the presynaptic signals arrive coherently. Second, the necessary degree of coherence in the signal arrival times can be attained during ontogenetic development by virtue of an unsupervised hebbian learning rule. Learning selects connections with matching delays from a broad distribution of axons with random delays. Third, the learning rule also selects the correct delays from two independent groups of inputs, for example, from the left and right ear.

/pdf/a-neuronal-learning-rule-for-sub-millisecond-temporal-coding-57369ghp02.pdf

A neuronal learning rule for sub-millisecond temporal coding

A correlation-based ~‘‘Hebbian’’ ! learning rule at a spike level with millisecond resolution is formulated, mathematically analyzed, and compared with learning in a firing-rate description. The relative timing of presynaptic and postsynaptic spikes influences synaptic weights via an asymmetric ‘‘learning window.’’ A differential equation for the learning dynamics is derived under the assumption that the time scales of learning and neuronal spike dynamics can be separated. The differential equation is solved for a Poissonian neuron model with stochastic spike arrival. It is shown that correlations between input and output spikes tend to stabilize structure formation. With an appropriate choice of parameters, learning leads to an intrinsic normalization of the average weight and the output firing rate. Noise generates diffusion-like spreading of synaptic weights. @S1063-651X~99!02804-4#

/pdf/hebbian-learning-and-spiking-neurons-185vew6wal.pdf

Hebbian learning and spiking neurons

It is generally believed that a neuron is a threshold element that fires when some variable u reaches a threshold. Here we pursue the question of whether this picture can be justified and study the four-dimensional neuron model of Hodgkin and Huxley as a concrete example. The model is approximated by a response kernel expansion in terms of a single variable, the membrane voltage. The first-order term is linear in the input and its kernel has the typical form of an elementary postsynaptic potential. Higher-order kernels take care of nonlinear interactions between input spikes. In contrast to the standard Volterra expansion, the kernels depend on the firing time of the most recent output spike. In particular, a zero-order kernel that describes the shape of the spike and the typical after-potential is included. Our model neuron fires if the membrane voltage, given by the truncated response kernel expansion, crosses a threshold. The threshold model is tested on a spike train generated by the Hodgkin-Huxley model with a stochastic input current. We find that the threshold model predicts 90 percent of the spikes correctly. Our results show that, to good approximation, the description of a neuron as a threshold element can indeed be justified.

/pdf/reduction-of-the-hodgkin-huxley-equations-to-a-single-cs2uyrj58w.pdf

Reduction of the hodgkin-huxley equations to a single-variable threshold model

Hebbian learning allows a network of spiking neurons to store and retrieve spatio-temporal patterns with a time resolution of 1 ms, despite the long postsynaptic and dendritic integration times. To show this, we introduce and analyze a model of spiking neurons, the spike response model, with a realistic distribution of axonal delays and with realistic postsynaptic potentials. Learning is performed by a local Hebbian rule which is based on the synchronism of presynaptic neurotransmitter release and some short-acting postsynaptic process. The time window of this synchronism determines the temporal resolution of pattern retrieval, which can be initiated by applying a short external stimulus pattern. Furthermore, a rate quantization is found in dependence upon the threshold value of the neurons, i.e., in a given time a pattern runs n times as often as learned, where n is a positive integer (n ? 0). We show that all information about the spike pattern is lost if only mean firing rates (temporal average) or ensemble activities (spatial average) are considered. An average over several retrieval runs in order to generate a post-stimulus time histogram may also deteriorate the signal. The full information on a pattern is contained in the spike raster of a single run. Our results stress the importance, and advantage, of coding by spatio-temporal spike patterns instead of firing rates and average ensemble activity. The implications regarding modelling and experimental data analysis are discussed.

/pdf/why-spikes-hebbian-learning-and-retrieval-of-time-resolved-4tm1mch06t.pdf

Why spikes? Hebbian learning and retrieval of time-resolved excitation patterns

Exploiting local stability, we show what neuronal characteristics are essential to ensure that coherent oscillations are asymptotically stable in a spatially homogeneous network of spiking neurons. Under standard conditions, a necessary and, in the limit of a large number of interacting neighbors, also sufficient condition is that the postsynaptic potential is increasing in time as the neurons fire. If the postsynaptic potential is decreasing, oscillations are bound to be unstable. This is a kind of locking theorem and boils down to a subtle interplay of axonal delays, postsynaptic potentials, and refractory behavior. The theorem also allows for mixtures of excitatory and inhibitory interactions. On the basis of the locking theorem, we present a simple geometric method to verify the existence and local stability of a coherent oscillation.

/pdf/what-matters-in-neuronal-locking-11pamojkrr.pdf

J. Leo van Hemmen

Papers

A neuronal learning rule for sub-millisecond temporal coding

Hebbian learning and spiking neurons

Reduction of the hodgkin-huxley equations to a single-variable threshold model

Why spikes? Hebbian learning and retrieval of time-resolved excitation patterns

What matters in neuronal locking