J
Jonathan Tuke
Researcher at University of Adelaide
Publications - 83
Citations - 1246
Jonathan Tuke is an academic researcher from University of Adelaide. The author has contributed to research in topics: Population & Bayesian probability. The author has an hindex of 16, co-authored 79 publications receiving 905 citations.
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Journal ArticleDOI
Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia
Raymond Tobler,Adam Ben Rohrlach,Julien Soubrier,Julien Soubrier,Pere Bover,Bastien Llamas,Jonathan Tuke,Nigel G. Bean,Ali Abdullah-Highfold,Shane Agius,Amy O’Donoghue,Isabel O’Loughlin,Peter Sutton,Peter Sutton,Fran Zilio,Keryn Walshe,Alan N. Williams,Chris S. M. Turney,Matthew Williams,Matthew Williams,Stephen M. Richards,Robert John Mitchell,Emma Kowal,John R. Stephen,Lesley Williams,Wolfgang Haak,Alan Cooper +26 more
TL;DR: 111 mitochondrial genomes from historical Aboriginal Australian hair samples are reported, whose origins enable us to reconstruct Australian phylogeographic history before European settlement, and find evidence for the continuous presence of populations in discrete geographic areas dating back to around 50 ka.
Journal ArticleDOI
GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments.
Stephen M. Crotty,Stephen M. Crotty,Bui Quang Minh,Bui Quang Minh,Nigel G. Bean,Barbara R. Holland,Jonathan Tuke,Lars S. Jermiin,Arndt von Haeseler,Arndt von Haeseler +9 more
TL;DR: Simulations show that using the GHOST model, IQ-TREE can accurately recover the tree topology, branch lengths and substitution model parameters from heterotachously-evolved sequences, and it is shown that, owing to the minimization of model constraints, theGHOST model offers unique biological insights when applied to empirical data.
Journal ArticleDOI
The effects of air pollution on asthma hospital admissions in Adelaide, South Australia, 2003–2013: time-series and case–crossover analyses
TL;DR: It is suggested that children are more vulnerable and the associations between exposure to air pollutants and asthma hospitalizations tended to be stronger in the cool season compared to the warm season, with the exception of ozone.
Journal ArticleDOI
Evaluation of the Triple Tibial Osteotomy. A new technique for the management of the canine cruciate-deficient stifle
TL;DR: The triple tibial osteotomy is described and the results of a prospective study of 64 consecutive cases are presented, showing that TTO provided a satisfactory clinical outcome in a very high percentage of cases.
Posted ContentDOI
GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments
Stephen M. Crotty,Stephen M. Crotty,Bui Quang Minh,Bui Quang Minh,Nigel G. Bean,Barbara R. Holland,Jonathan Tuke,Lars S. Jermiin,Arndt von Haeseler,Arndt von Haeseler +9 more
TL;DR: This work introduces the General Heterogeneous evolution On a Single Topology (GHOST) model of sequence evolution, implemented under a maximum-likelihood framework in the phylogenetic program IQ-TREE, and shows that it can accurately recover the tree topology, branch lengths, substitution rate and base frequency parameters from heterotachous sequences.