/pdf/self-assembled-monolayers-of-thiolates-on-metals-as-a-form-1neb0hj3k4.pdf

Self-assembled monolayers of thiolates on metals as a form of nanotechnology.

The field of self-assembled monolayers (SAMs) has witnessed tremendous growth in synthetic sophistication and depth of characterization over the past 15 years.1 However, it is interesting to comment on the modest beginning and on important milestones. The field really began much earlier than is now recognized. In 1946 Zisman published the preparation of a monomolecular layer by adsorption (self-assembly) of a surfactant onto a clean metal surface.2 At that time, the potential of self-assembly was not recognized, and this publication initiated only a limited level of interest. Early work initiated in Kuhn’s laboratory at Gottingen, applying many years of experience in using chlorosilane derivative to hydrophobize glass, was followed by the more recent discovery, when Nuzzo and Allara showed that SAMs of alkanethiolates on gold can be prepared by adsorption of di-n-alkyl disulfides from dilute solutions.3 Getting away from the moisture-sensitive alkyl trichlorosilanes, as well as working with crystalline gold surfaces, were two important reasons for the success of these SAMs. Many self-assembly systems have since been investigated, but monolayers of alkanethiolates on gold are probably the most studied SAMs to date. The formation of monolayers by self-assembly of surfactant molecules at surfaces is one example of the general phenomena of self-assembly. In nature, self-assembly results in supermolecular hierarchical organizations of interlocking components that provides very complex systems.4 SAMs offer unique opportunities to increase fundamental understanding of self-organization, structure-property relationships, and interfacial phenomena. The ability to tailor both head and tail groups of the constituent molecules makes SAMs excellent systems for a more fundamental understanding of phenomena affected by competing intermolecular, molecular-substrates and molecule-solvent interactions like ordering and growth, wetting, adhesion, lubrication, and corrosion. That SAMs are well-defined and accessible makes them good model systems for studies of physical chemistry and statistical physics in two dimensions, and the crossover to three dimensions. SAMs provide the needed design flexibility, both at the individual molecular and at the material levels, and offer a vehicle for investigation of specific interactions at interfaces, and of the effect of increasing molecular complexity on the structure and stability of two-dimensional assemblies. These studies may eventually produce the design capabilities needed for assemblies of three-dimensional structures.5 However, this will require studies of more complex systems and the combination of what has been learned from SAMs with macromolecular science. The exponential growth in SAM research is a demonstration of the changes chemistry as a disciAbraham Ulman was born in Haifa, Israel, in 1946. He studied chemistry in the Bar-Ilan University in Ramat-Gan, Israel, and received his B.Sc. in 1969. He received his M.Sc. in phosphorus chemistry from Bar-Ilan University in 1971. After a brief period in industry, he moved to the Weizmann Institute in Rehovot, Israel, and received his Ph.D. in 1978 for work on heterosubstituted porphyrins. He then spent two years at Northwestern University in Evanston, IL, where his main interest was onedimensional organic conductors. In 1985 he joined the Corporate Research Laboratories of Eastman Kodak Company, in Rochester, NY, where his research interests were molecular design of materials for nonlinear optics and self-assembled monolayers. In 1994 he moved to Polytechnic University where he is the Alstadt-Lord-Mark Professor of Chemistry. His interests encompass self-assembled monolayers, surface engineering, polymers at interface, and surfaces phenomena. 1533 Chem. Rev. 1996, 96, 1533−1554

/pdf/formation-and-structure-of-self-assembled-monolayers-5eorfomxfu.pdf

Formation and Structure of Self-Assembled Monolayers.

https://is.muni.cz/el/1431/podzim2006/C7780/um/Read/2711172/SAM_str_grwth_ProgSurfSci00_151.pdf

Structure and growth of self-assembling monolayers

We propose a modification in the three-dimensional Ewald summation technique for calculations of long-range Coulombic forces for systems with a slab geometry that are periodic in two dimensions and have a finite length in the third dimension. The proposed method adds a correction term to the standard Ewald summation formula. To test the current method, molecular dynamics simulations on water between Pt(111) walls have been carried out. For a more direct test, the calculation of the pair forces between two point charges has been also performed. An excellent agreement with the results from simulations using the rigorous two dimensional Ewald summation technique were obtained. We observed that a significant reduction in computing time can be achieved when the proposed modification is used.

Ewald summation for systems with slab geometry

Reference LPI-ARTICLE-1999-017View record in Web of Science Record created on 2006-02-21, modified on 2017-05-12

/pdf/metal-oxide-surfaces-and-their-interactions-with-aqueous-22jt31pax0.pdf

Metal Oxide Surfaces and Their Interactions with Aqueous Solutions and Microbial Organisms.

Molecular dynamics simulations have been used to study the structure and dynamics of monolayers of long‐chain molecules on a metallic substrate. The system consisted of 90 molecules held at a fixed surface density and periodically replicated in the plane of the surface. Two models have been studied as alternative representations of the admolecule–surface interactions in layers formed by the self‐assembly of alkyl thiol [SH(CH2)15CH3] molecules onto a gold substrate. The principal difference between the two models is that in one, the S–C bond is required to lie nearly parallel to the substrate surface. After lengthy equilibration at room temperature, both models yield monolayers in which the chains are aligned and tilted with respect to the surface normal. Although the tilt angle is different for the two models, the thickness of the monolayers is the same and the influence of the ‘‘modified‐headgroup’’ on the detailed structure of the film is confined to the region closest to the metal surface. There are s...

Simulation of a monolayer of alkyl thiol chains

Molecular dynamics calculations have been used to study the effects of temperature on a dense monolayer of hydrocarbon molecules. The simulation system consisted of 90 flexible chains with headgroups and had periodic boundary conditions in the plane of the surface. The interaction potentials were chosen to model a monolayer of chemisorbed alkyl thiol molecules [S(CH2)15CH3] on a Au(111) surface; molecules that self‐assemble from solution to form a triangular lattice at a fixed surface density of 21.4 A2 per chain. Simulations at different temperatures reveal distinct phases with different kinds of disorder. Nonequilibrium molecular dynamics techniques have been used to investigate the transition from the high‐temperature state, in which the molecular planes undergo reorientational motion, to a low‐temperature, orientationally ordered state. Possible correlations between the rotational phase transition and the appearance of conformational defects are also explored.

Molecular dynamics simulation of the effects of temperature on a dense monolayer of long‐chain molecules

Number of water molecules coupled to the transport of sodium, potassium and hydrogen ions via gramicidin, nonactin or valinomycin

A method is presented for the summation of long range coulomb interactions in systems with periodicity in two dimensions and a finite thickness in the third dimension: a geometry appropriate for simulations of surfaces and interfaces containing charged particles. The numerical requirements of the method parallel those of the widely used Ewald methods for systems with periodicity in three dimensions. The method is tested using configurations from molecular dynamics simulations of monolayers of chain molecules terminated by polar tail groups.

An Ewald summation method for planar surfaces and interfaces

Ab initio molecular orbital pair potentials for the interaction of Fe2+ and Fe3+ ions with H2O are reported. Molecular dynamics calculations of the static structure of the solvation shell of Fe2+ and Fe3+ in water using the ab initio pair potentials gives physically incorrect results, i.e., the coordination numbers are eight instead of six as observed experimentally. This problem has also been encountered by other workers for divalent transition metal ions in water. By computing three‐body energies from the interaction of two water molecules with the cations, we show that the origin of the problem is most likely in the assumption of the additivity of the pair potentials, i.e., neglect of many‐body forces. Empirical potentials are reported which take approximate account of the three‐body forces and give coordination numbers of six for both Fe2+ and Fe3+ in water.

Joseph Hautman

Papers

Simulation of a monolayer of alkyl thiol chains

Molecular dynamics simulation of the effects of temperature on a dense monolayer of long‐chain molecules

Number of water molecules coupled to the transport of sodium, potassium and hydrogen ions via gramicidin, nonactin or valinomycin

An Ewald summation method for planar surfaces and interfaces

Nonadditivity of ab initio pair potentials for molecular dynamics of multivalent transition metal ions in water