抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Deposits of clastic carbonate-dominated (calciclastic) sedimentary slope systems in the rock record have been identified mostly as linearly-consistent carbonate apron deposits, even though most ancient clastic carbonate slope deposits fit the submarine fan systems better. Calciclastic submarine fans are consequently rarely described and are poorly understood. Subsequently, very little is known especially in mud-dominated calciclastic submarine fan systems. Presented in this study are a sedimentological core and petrographic characterisation of samples from eleven boreholes from the Lower Carboniferous of Bowland Basin (Northwest England) that reveals a >250 m thick calciturbidite complex deposited in a calciclastic submarine fan setting. Seven facies are recognised from core and thin section characterisation and are grouped into three carbonate turbidite sequences. They include: 1) Calciturbidites, comprising mostly of highto low-density, wavy-laminated bioclast-rich facies; 2) low-density densite mudstones which are characterised by planar laminated and unlaminated muddominated facies; and 3) Calcidebrites which are muddy or hyper-concentrated debrisflow deposits occurring as poorly-sorted, chaotic, mud-supported floatstones. These

Phd by thesis

N G van Kampen 1981 Amsterdam: North-Holland xiv + 419 pp price Dfl 180 This is a book which, at a lower price, could be expected to become an essential part of the library of every physical scientist concerned with problems involving fluctuations and stochastic processes, as well as those who just enjoy a beautifully written book. It provides an extensive graduate-level introduction which is clear, cautious, interesting and readable.

https://iopscience.iop.org/article/10.1088/0031-9112/34/4/040/pdf

Stochastic Processes in Physics and Chemistry

Wetting phenomena are ubiquitous in nature and technology. A solid substrate exposed to the environment is almost invariably covered by a layer of fluid material. In this review, the surface forces that lead to wetting are considered, and the equilibrium surface coverage of a substrate in contact with a drop of liquid. Depending on the nature of the surface forces involved, different scenarios for wetting phase transitions are possible; recent progress allows us to relate the critical exponents directly to the nature of the surface forces which lead to the different wetting scenarios. Thermal fluctuation effects, which can be greatly enhanced for wetting of geometrically or chemically structured substrates, and are much stronger in colloidal suspensions, modify the adsorption singularities. Macroscopic descriptions and microscopic theories have been developed to understand and predict wetting behavior relevant to microfluidics and nanofluidics applications. Then the dynamics of wetting is examined. A drop, placed on a substrate which it wets, spreads out to form a film. Conversely, a nonwetted substrate previously covered by a film dewets upon an appropriate change of system parameters. The hydrodynamics of both wetting and dewetting is influenced by the presence of the three-phase contact line separating "wet" regions from those that are either dry or covered by a microscopic film only. Recent theoretical, experimental, and numerical progress in the description of moving contact line dynamics are reviewed, and its relation to the thermodynamics of wetting is explored. In addition, recent progress on rough surfaces is surveyed. The anchoring of contact lines and contact angle hysteresis are explored resulting from surface inhomogeneities. Further, new ways to mold wetting characteristics according to technological constraints are discussed, for example, the use of patterned surfaces, surfactants, or complex fluids.

/pdf/wetting-and-spreading-56ditqbfmj.pdf

Wetting and Spreading

Differently from passive Brownian particles, active particles, also known as self-propelled Brownian particles or microswimmers and nanoswimmers, are capable of taking up energy from their environment and converting it into directed motion. Because of this constant flow of energy, their behavior can be explained and understood only within the framework of nonequilibrium physics. In the biological realm, many cells perform directed motion, for example, as a way to browse for nutrients or to avoid toxins. Inspired by these motile microorganisms, researchers have been developing artificial particles that feature similar swimming behaviors based on different mechanisms. These man-made micromachines and nanomachines hold a great potential as autonomous agents for health care, sustainability, and security applications. With a focus on the basic physical features of the interactions of self-propelled Brownian particles with a crowded and complex environment, this comprehensive review will provide a guided tour through its basic principles, the development of artificial self-propelling microparticles and nanoparticles, and their application to the study of nonequilibrium phenomena, as well as the open challenges that the field is currently facing.

/pdf/active-particles-in-complex-and-crowded-environments-4pyirdi1aj.pdf

Active Particles in Complex and Crowded Environments

We study the phase behaviour and structure of model colloid-polymer mixtures. By integrating out the degrees of freedom of the non-adsorbing ideal polymer coils, we derive a formal expression for the effective one-component Hamiltonian of the colloids. Using the two-body (Asakura-Oosawa pair potential) approximation to this effective Hamiltonian in computer simulations, we determine the phase behaviour for size ratios q = p/c = 0.1, 0.4, 0.6, and 0.8, where c and p denote the diameters of the colloids and the polymer coils, respectively. For large q, we find both a fluid-solid and a stable fluid-fluid transition. However, the latter becomes metastable with respect to a broad fluid-solid transition for q0.4. For q = 0.1 there is a metastable isostructural solid-solid transition which is likely to become stable for smaller values of q. We compare the phase diagrams obtained from simulation with those of perturbation theory using the same effective one-component Hamiltonian and with the results of the free-volume approach. Although both theories capture the main features of the topologies of the phase diagrams, neither provides an accurate description of the simulation results. Using simulation and the Percus-Yevick approximation we determine the radial distribution function g(r) and the structure factor S(k) of the effective one-component system along the fluid-solid and fluid-fluid phase boundaries. At state-points on the fluid-solid boundary corresponding to high colloid packing fractions (packing fractions equal to or larger than that at the triple point), the value of S(k) at its first maximum is close to the value 2.85 given by the Hansen-Verlet freezing criterion. However, at lower colloid packing fractions freezing occurs when the maximum value is much lower than 2.85. Close to the critical point of the fluid-fluid transition we find Ornstein-Zernike behaviour and at very dilute colloid concentrations S(k) exhibits pronounced small-angle scattering which reflects the growth of clusters of the colloids. We compare the phase behaviour of this model with that found in studies of additive binary hard-sphere mixtures.

/pdf/phase-behaviour-and-structure-of-model-colloid-polymer-mhfy7uaygp.pdf

Phase behaviour and structure of model colloid-polymer mixtures

Active colloids exhibit persistent motion, which can lead to motility-induced phase separation (MIPS). However, there currently exists no microscopic theory to account for this phenomenon. We report a first-principles theory, free of fit parameters, for active spherical colloids, which shows explicitly how an effective many-body interaction potential is generated by activity and how this can rationalize MIPS. For a passively repulsive system the theory predicts phase separation and pair correlations in quantitative agreement with simulation. For an attractive system the theory shows that phase separation becomes suppressed by moderate activity, consistent with recent experiments and simulations, and suggests a mechanism for reentrant cluster formation at high activity.

/pdf/effective-interactions-in-active-brownian-suspensions-3nttfb039c.pdf

Effective interactions in active Brownian suspensions.

Colloidal dispersions are commonly encountered in everyday life and represent an important class of complex fluid. Of particular significance for many commercial products and industrial processes is the ability to control and manipulate the macroscopic flow response of a dispersion by tuning the microscopic interactions between the constituents. An important step towards attaining this goal is the development of robust theoretical methods for predicting from first-principles the rheology and nonequilibrium microstructure of well defined model systems subject to external flow. In this review we give an overview of some promising theoretical approaches and the phenomena they seek to describe, focusing, for simplicity, on systems for which the colloidal particles interact via strongly repulsive, spherically symmetric interactions. In presenting the various theories, we will consider first low volume fraction systems, for which a number of exact results may be derived, before moving on to consider the intermediate and high volume fraction states which present both the most interesting physics and the most demanding technical challenges. In the high volume fraction regime particular emphasis will be given to the rheology of dynamically arrested states.

/pdf/nonlinear-rheology-of-colloidal-dispersions-2pc7qh6t6o.pdf

Nonlinear rheology of colloidal dispersions

We present a density functional theory for mixtures of (hard sphere) colloidal particles and ideal polymers. For this extreme nonadditive system we employ a fundamental measures approach to construct a functional which incorporates the correct dimensional crossover and the exact low density limit. In bulk fluid mixtures the functional yields the same free energy and, therefore, the same gas-liquid (demixing) transition as given by free-volume theory. It generates consistent pair correlation functions; the partial structure factors S(ij)(k) diverge, as k-->0, at the critical point obtained from the free energy. Our results for the structure agree well with those from simulation and Percus-Yevick theory.

Density functional for a model colloid-polymer mixture

We investigate the structural, dynamical, and viscoelastic properties of colloid-polymer mixtures at intermediate colloid volume fraction and varying polymer concentrations, thereby tuning the attractive interactions. Within the examined range of polymer concentrations, the samples varied from fluids to gels. In the liquid phase, an increasing correlation length of the density fluctuations when approaching the gelation boundary was observed by static light scattering and microscopy, indicating clustering and formation of space-spanning networks. Simultaneously, the correlation function determined by dynamic light scattering decays completely, indicating the absence of dynamical arrest. Clustering and formation of transient networks when approaching the gelation boundary is supported by significant changes in the viscoelastic properties of the samples. Upon increasing the polymer concentration beyond the gelation boundary, the rheological properties changed qualitatively again, now they are consistent with...

/pdf/structure-dynamics-and-rheology-of-colloid-polymer-mixtures-3mlywqg1e0.pdf

Joseph M. Brader

Papers

Phase behaviour and structure of model colloid-polymer mixtures

Effective interactions in active Brownian suspensions.

Nonlinear rheology of colloidal dispersions

Density functional for a model colloid-polymer mixture

Structure, dynamics, and rheology of colloid-polymer mixtures: From liquids to gels