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Katrine Grimstrup Joensen

Researcher at Statens Serum Institut

Publications -  20
Citations -  2473

Katrine Grimstrup Joensen is an academic researcher from Statens Serum Institut. The author has contributed to research in topics: Campylobacter jejuni & Campylobacter. The author has an hindex of 11, co-authored 18 publications receiving 1681 citations. Previous affiliations of Katrine Grimstrup Joensen include Technical University of Denmark.

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Journal ArticleDOI

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

Katrine Grimstrup Joensen, +6 more
- 01 May 2014 - 
TL;DR: A real-time evaluation of WGS for routine typing and surveillance of verocytotoxin-producing Escherichia coli found whole-genome sequencing typing is a superior alternative to conventional typing strategies and may also be applied to typing and Surveillance of other pathogens.
Journal ArticleDOI

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

Katrine Grimstrup Joensen, +5 more
- 01 Aug 2015 - 
TL;DR: SerotypeFinder for WGS-based O and H typing predicted 560 of 569 O types and 504 of 508 H types, consistent with conventional serotyping, making WGS typing a superior alternative to conventional typing strategies.
Journal ArticleDOI

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens.

Ea Zankari, +5 more
- 01 Oct 2017 - 
TL;DR: PointFinder proved, with high concordance between phenotypic and predicted antimicrobial susceptibility, to be a user-friendly web tool for detection of chromosomal point mutations associated with antimicrobial resistance.
Journal ArticleDOI

Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance and E. coli virulence genes in bacteriophage and prophage nucleotide sequences

Kortine Kleinheinz, +2 more
TL;DR: This work describes how two tools, ResFinder and VirulenceFinder, can be used to identify acquired antibiotic resistance and virulence genes in phage genomes of interest.
Journal ArticleDOI

Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains.

Nadia Boisen, +12 more
- 08 Sep 2020 - 
TL;DR: The data suggest that a molecular definition of EAEC could comprise E. coli strains harboring AggR and a complete AAF(I-V) or CS22 gene cluster, and it is possible that strains meeting this definition could be both enteric bacteria and urinary/systemic pathogens.