K
Kenneth Dalenberg
Researcher at Rutgers University
Publications - 6
Citations - 1633
Kenneth Dalenberg is an academic researcher from Rutgers University. The author has contributed to research in topics: Protein Data Bank & Computer science. The author has an hindex of 2, co-authored 2 publications receiving 716 citations.
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Journal ArticleDOI
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.
Stephen K. Burley,Helen M. Berman,Charmi Bhikadiya,Chunxiao Bi,Li Chen,Luigi Di Costanzo,Cole H. Christie,Kenneth Dalenberg,Jose M. Duarte,Shuchismita Dutta,Zukang Feng,Sutapa Ghosh,David S. Goodsell,David S. Goodsell,Rachel Kramer Green,Vladimir Guranovic,Dmytro Guzenko,Brian P. Hudson,Tara Kalro,Yu-He Liang,Robert Lowe,Harry Namkoong,Ezra Peisach,Irina Periskova,Andreas Prlić,Christopher Randle,Alexander S. Rose,Peter W. Rose,Raul Sala,Monica Sekharan,Chenghua Shao,Lihua Tan,Yi-Ping Tao,Yana Valasatava,Maria Voigt,John D. Westbrook,Jesse Woo,Huanwang Yang,Jasmine Young,Marina Zhuravleva,Christine Zardecki +40 more
TL;DR: Recent reorganization of RCSB PDB activities into four integrated, interdependent services is described in detail, together with tools and resources added over the past 2 years to RCSb PDB web portals in support of a ‘Structural View of Biology.’
Journal ArticleDOI
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Stephen K. Burley,Charmi Bhikadiya,Chunxiao Bi,Sebastian Bittrich,Li Chen,Gregg V. Crichlow,Cole Christie,Kenneth Dalenberg,Luigi Di Costanzo,Jose M. Duarte,Shuchismita Dutta,Zukang Feng,Sai J. Ganesan,David S. Goodsell,David S. Goodsell,Sutapa Ghosh,Rachel Kramer Green,Vladimir Guranovic,Dmytro Guzenko,Brian P. Hudson,Catherine L. Lawson,Yu-He Liang,Robert Lowe,Harry Namkoong,Ezra Peisach,Irina Persikova,Christopher Randle,Alexander S. Rose,Yana Rose,Andrej Sali,Joan Segura,Monica Sekharan,Chenghua Shao,Yi-Ping Tao,Maria Voigt,John D. Westbrook,Jasmine Young,Christine Zardecki,Marina Zhuravleva +38 more
TL;DR: New features and resources of the RCSB PDB have been described in detail using examples that showcase recently released structures of SARS-CoV-2 proteins and host cell proteins relevant to understanding and addressing the COVID-19 global pandemic.
Journal ArticleDOI
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
Stephen K. Burley,Charmi Bhikadiya,Chunxiao Bi,Sebastian Bittrich,Henry Chao,Li Chen,Paul Craig,Gregg V. Crichlow,Kenneth Dalenberg,Jose M. Duarte,Shuchismita Dutta,Maryam Fayazi,Zukang Feng,Justin W. Flatt,Sai J. Ganesan,Sutapa Ghosh,David S. Goodsell,Rachel Kramer Green,Vladimir Guranovic,Jeremy Henry,Brian P. Hudson,Igor Khokhriakov,Catherine L. Lawson,Yu-He Liang,Robert Lowe,Ezra Peisach,Irina Persikova,Dennis W. Piehl,Yana Rose,Andrej Sali,Joan Segura,Monica Sekharan,Chenghua Shao,Brinda Vallat,Maria Voigt,Ben Webb,John D. Westbrook,S. B. Whetstone,Jasmine Young,Arthur O. Zalevsky,Christine Zardecki +40 more
TL;DR: The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) as discussed by the authors is the US data center for the open-access PDB archive and is responsible for PDB data security.
Journal ArticleDOI
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
Stephen K. Burley,Charmi Bhikadiya,Chunxiao Bi,Sebastian Bittrich,Henry Chao,Li Chen,Paul Craig,Gregg V. Crichlow,Kenneth Dalenberg,Jose M. Duarte,Shuchismita Dutta,Maryam Fayazi,Zukang Feng,Justin W. Flatt,Sai J. Ganesan,Sutapa Ghosh,David S. Goodsell,Rachel Kramer Green,Vladimir Guranovic,Jeremy Henry,Brian P. Hudson,Catherine L. Lawson,Yu-He Liang,Robert Lowe,Ezra Peisach,Irina Persikova,Dennis W. Piehl,Yana Rose,Andrej Sali,Joan Segura,Monica Sekharan,Chenghua Shao,Brinda Vallat,Maria Voigt,Ben Webb,John D. Westbrook,S. B. Whetstone,Jasmine Young,Arthur O. Zalevsky,Christine Zardecki +39 more
TL;DR: The Protein Data Bank (PDB) as mentioned in this paper is an open-access global archive housing 3D biomolecular structure data, which is jointly managed by the National Science Foundation, National Institutes of Health, and US Department of Energy and serves as the US data center for the wwPDB.
Posted ContentDOI
Outcome of Crash Course Training on Protein Structure Prediction with Artificial Intelligence
D.R. Balamurugan,Maureen Dougherty,Joseph H. Lubin,Paul Arias,Janet Chang,Kenneth Dalenberg,Vladislav Kholodovych,Ehud Zelzion,Sagar D. Khare,J. B. von Oehsen,Michael E. Zwick,Stephen K. Burley +11 more
TL;DR: The crash course “Enabling Protein Structure Prediction with Artificial Intelligence “ was conducted in collaboration with domain experts and research computing professionals and was well received by the community as there were 750 registrants from all over the world.