K
Koji Ogawa
Researcher at National Institute of Advanced Industrial Science and Technology
Publications - 9
Citations - 207
Koji Ogawa is an academic researcher from National Institute of Advanced Industrial Science and Technology. The author has contributed to research in topics: Protein tag & Peptide. The author has an hindex of 6, co-authored 9 publications receiving 161 citations.
Papers
More filters
Journal ArticleDOI
A large-scale targeted proteomics assay resource based on an in vitro human proteome
Masaki Matsumoto,Fumiko Matsuzaki,Kiyotaka Oshikawa,Naoki Goshima,Masatoshi Mori,Yoshifumi Kawamura,Koji Ogawa,Eriko Fukuda,Hirokazu Nakatsumi,Tohru Natsume,Kazuhiko Fukui,Katsuhisa Horimoto,Takeshi Nagashima,Ryo Funayama,Keiko Nakayama,Keiichi I. Nakayama +15 more
TL;DR: A targeted proteomics platform—in vitro proteome–assisted multiple reaction monitoring (MRM) for proteinabsolute quantification (iMPAQT) by using >18,000 human recombinant proteins, thus enabling protein absolute quantification on a genome-wide scale.
Journal ArticleDOI
A small-molecule compound inhibits a collagen-specific molecular chaperone and could represent a potential remedy for fibrosis
Shinya Ito,Shinya Ito,Koji Ogawa,Koh Takeuchi,Motoki Takagi,Masahito Yoshida,Takatsugu Hirokawa,Shoshiro Hirayama,Kazuo Shin-ya,Ichio Shimada,Takayuki Doi,Naoki Goshima,Tohru Natsume,Kazuhiro Nagata +13 more
TL;DR: Structural information obtained with NMR analysis revealed that Col003 competitively binds to the collagen-binding site on Hsp47, and it is proposed that these structural insights could provide a basis for designing more effective therapeutic drugs for managing fibrosis.
Journal ArticleDOI
Directed Evolution of a Cyclized Peptoid–Peptide Chimera against a Cell-Free Expressed Protein and Proteomic Profiling of the Interacting Proteins to Create a Protein–Protein Interaction Inhibitor
TL;DR: The combination of in vitro display evolution of cyclized N-alkyl peptidomimetics and in vitro expression of human proteins would be a powerful approach for the high-speed discovery of diverse human protein-targeted cyclized EMTs, as well as identifying a novel β-catenin-binding cyclized peptoid-peptide chimera.
Journal ArticleDOI
DIVERSE System: De Novo Creation of Peptide Tags for Non-enzymatic Covalent Labeling by In Vitro Evolution for Protein Imaging Inside Living Cells
TL;DR: Using the DIVERSE system, de novo creation of non-enzymatically covalent-labeling peptide tags for a synthetic small-molecule target from a random peptide library was demonstrated and protein labeling with these tags was applicable to N- and C-terminal fusions, multiple different proteins and fluorophores, and intracellular labeling.
Journal ArticleDOI
Promotion of the Warburg effect is associated with poor benefit from adjuvant chemotherapy in colorectal cancer.
Masashi Kitazawa,Tomohisa Hatta,Yusuke Sasaki,Kazuhiko Fukui,Koji Ogawa,Eriko Fukuda,Naoki Goshima,Natsuko Okita,Yasuhide Yamada,Hitoshi Nakagama,Tohru Natsume,Katsuhisa Horimoto +11 more
TL;DR: The Warburg effect appeared in absolute protein levels between tumor and normal mucosa specimens demonstrated, and the levels of proteins associated with the tricarboxylic citric acid cycle were remarkably reduced in the malignant tumors which had relapsed after surgery and treatment with 5‐fluorouracil‐based adjuvant therapy.