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Lucas von Chamier
Researcher at University College London
Publications - 9
Citations - 426
Lucas von Chamier is an academic researcher from University College London. The author has contributed to research in topics: Deep learning & Tissue homeostasis. The author has an hindex of 6, co-authored 8 publications receiving 170 citations.
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Journal ArticleDOI
Democratising deep learning for microscopy with ZeroCostDL4Mic.
Lucas von Chamier,Romain F. Laine,Romain F. Laine,Johanna Jukkala,Christoph Spahn,Daniel Krentzel,Daniel Krentzel,Elias Nehme,Martina Lerche,Sara Hernández-Pérez,Sara Hernández-Pérez,Pieta K. Mattila,Pieta K. Mattila,Eleni Karinou,Seamus Holden,Ahmet Can Solak,Alexander Krull,Tim-Oliver Buchholz,Martin L. Jones,Loic Royer,Christophe Leterrier,Yoav Shechtman,Florian Jug,Mike Heilemann,Guillaume Jacquemet,Ricardo Henriques,Ricardo Henriques,Ricardo Henriques +27 more
TL;DR: ZeroCostDL4Mic as discussed by the authors is an entry-level platform simplifying DL access by leveraging the free, cloud-based computational resources of Google Colab, which allows researchers with no coding expertise to train and apply key DL networks to perform tasks including segmentation, object detection, denoising, and image-to-image translation.
Journal ArticleDOI
Artificial intelligence for microscopy: what you should know.
TL;DR: How DL shows an outstanding potential to push the limits of microscopy, enhancing resolution, signal and information content in acquired data is discussed, along with the future directions expected in this field.
Posted ContentDOI
ZeroCostDL4Mic: an open platform to simplify access and use of Deep-Learning in Microscopy
Lucas von Chamier,Johanna Jukkala,Christoph Spahn,Martina Lerche,Sara Hernández-Pérez,Pieta K. Mattila,Eleni Karinou,Seamus Holden,Ahmet Can Solak,Alexander Krull,Tim-Oliver Buchholz,Florian Jug,Loic Royer,Mike Heilemann,Romain F. Laine,Guillaume Jacquemet,Ricardo Henriques +16 more
TL;DR: A platform simplifying access to DL by exploiting the free, cloud-based computational resources of Google Colab is presented, which allows researchers to train, evaluate, and apply key DL networks to perform tasks including segmentation, detection, denoising, restoration, resolution enhancement and image-to-image translation.
Journal ArticleDOI
Human ATG4 autophagy proteases counteract attachment of ubiquitin-like LC3/GABARAP proteins to other cellular proteins
TL;DR: Overall, this work provides the first cellular evidence that mammalian LC3/GABARAP post-translationally modifies proteins akin to ubiquitination, with ATG4 proteases acting like deubiquitinating enzymes to counteract this modification (“deLC3ylation”).
Journal ArticleDOI
Automated cell tracking using StarDist and TrackMate.
Elnaz Fazeli,Nathan H. Roy,Gautier Follain,Romain F. Laine,Romain F. Laine,Lucas von Chamier,Pekka Hänninen,John E. Eriksson,Jean-Yves Tinevez,Guillaume Jacquemet +9 more
TL;DR: A detailed analysis pipeline is provided illustrating how the deep learning network StarDist can be combined with the popular tracking software TrackMate to perform 2D automated cell tracking and provide fully quantitative readouts.