M
Matthew Haynes
Researcher at San Diego State University
Publications - 51
Citations - 8856
Matthew Haynes is an academic researcher from San Diego State University. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 33, co-authored 48 publications receiving 8124 citations. Previous affiliations of Matthew Haynes include Joint Genome Institute & Scripps Research Institute.
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Journal ArticleDOI
Viruses in the faecal microbiota of monozygotic twins and their mothers
Alejandro Reyes,Matthew Haynes,Nicole Hanson,Florent E. Angly,Florent E. Angly,Andrew C. Heath,Forest Rohwer,Jeffrey I. Gordon +7 more
TL;DR: In this article, the viromes (metagenomes) of virus-like particles isolated from faecal samples collected from healthy adult female monozygotic twins and their mothers at three time points over a one-year period.
Journal ArticleDOI
Functional metagenomic profiling of nine biomes
Elizabeth A. Dinsdale,Robert Edwards,Dana Hall,Florent E. Angly,Mya Breitbart,Jennifer M. Brulc,Mike Furlan,Christelle Desnues,Matthew Haynes,Linlin Li,Lauren D. McDaniel,Mary Ann Moran,Karen E. Nelson,Christina Nilsson,Robert Olson,John H. Paul,Beltran Rodriguez Brito,Yijun Ruan,Brandon K. Swan,Rick Stevens,David L. Valentine,Rebecca Vega Thurber,Linda Wegley,Bryan A. White,Forest Rohwer +24 more
TL;DR: The magnitude of the microbial metabolic capabilities encoded by the viromes was extensive, suggesting that they serve as a repository for storing and sharing genes among their microbial hosts and influence global evolutionary and metabolic processes.
Journal ArticleDOI
The marine viromes of four oceanic regions
Florent E. Angly,Ben Felts,Mya Breitbart,Peter Salamon,Robert Edwards,Craig H. Carlson,Amy M. Chan,Matthew Haynes,Scott D Kelley,Hong-Hong Liu,Joseph M. Mahaffy,Jennifer E Mueller,Jim Nulton,Robert Olson,Rachel Parsons,Steve Rayhawk,Curtis A. Suttle,Forest Rohwer +17 more
TL;DR: The results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure.
Journal ArticleDOI
Laboratory Procedures to Generate Viral Metagenomes
TL;DR: This collection of laboratory protocols describes the steps to collect viruses from various samples with the specific aim of generating viral metagenome sequence libraries (viromes) using several concentration, purification, extraction, sequencing and heuristic bioinformatic methods.
Journal ArticleDOI
Using pyrosequencing to shed light on deep mine microbial ecology.
Robert Edwards,Beltran Rodriguez-Brito,Linda Wegley,Matthew Haynes,Mya Breitbart,Dean M Peterson,Martin O. Saar,Scott C. Alexander,E. Calvin Alexander,Forest Rohwer +9 more
TL;DR: The authors used pyrosequencing, a rapid and relatively inexpensive sequencing technology, to generate environmental genome sequences from two sites in the Soudan Mine, Minnesota, USA, which were adjacent to each other, but differed significantly in chemistry and hydrogeology.