Bermuda Biological Station for Research

About: Bermuda Biological Station for Research is a based out in . It is known for research contribution in the topics: Phytoplankton & Total organic carbon. The organization has 231 authors who have published 371 publications receiving 31880 citations.

Environmental Genome Shotgun Sequencing of the Sargasso Sea

Abstract: We have applied “whole-genome shotgun sequencing” to microbial populations collected en masse on tangential flow and impact filters from seawater samples collected from the Sargasso Sea near Bermuda. A total of 1.045 billion base pairs of nonredundant sequence was generated, annotated, and analyzed to elucidate the gene content, diversity, and relative abundance of the organisms within these environmental samples. These data are estimated to derive from at least 1800 genomic species based on sequence relatedness, including 148 previously unknown bacterial phylotypes. We have identified over 1.2 million previously unknown genes represented in these samples, including more than 782 new rhodopsin-like photoreceptors. Variation in species present and stoichiometry suggests substantial oceanic microbial diversity. Microorganisms are responsible for most of the biogeochemical cycles that shape the environment of Earth and its oceans. Yet, these organisms are the least well understood on Earth, as the ability to study and understand the metabolic potential of microorganisms has been hampered by the inability to generate pure cultures. Recent studies have begun to explore environ

Global sea-air CO2 flux based on climatological surface ocean pCO2, and seasonal biological and temperature effects

Abstract: Based on about 940,000 measurements of surface-water pCO2 obtained since the International Geophysical Year of 1956–59, the climatological, monthly distribution of pCO2 in the global surface waters representing mean non-El Nino conditions has been obtained with a spatial resolution of 4°×5° for a reference year 1995. The monthly and annual net sea–air CO2 flux has been computed using the NCEP/NCAR 41-year mean monthly wind speeds. An annual net uptake flux of CO2 by the global oceans has been estimated to be 2.2 (+22% or ?19%) Pg C yr?1 using the (wind speed)2 dependence of the CO2 gas transfer velocity of Wanninkhof (J. Geophys. Res. 97 (1992) 7373). The errors associated with the wind-speed variation have been estimated using one standard deviation (about±2 m s?1) from the mean monthly wind speed observed over each 4°×5° pixel area of the global oceans. The new global uptake flux obtained with the Wanninkhof (wind speed)2 dependence is compared with those obtained previously using a smaller number of measurements, about 250,000 and 550,000, respectively, and are found to be consistent within±0.2 Pg C yr?1. This estimate for the global ocean uptake flux is consistent with the values of 2.0±0.6 Pg C yr?1 estimated on the basis of the observed changes in the atmospheric CO2 and oxygen concentrations during the 1990s (Nature 381 (1996) 218; Science 287 (2000) 2467). However, if the (wind speed)3 dependence of Wanninkhof and McGillis (Res. Lett. 26 (1999) 1889) is used instead, the annual ocean uptake as well as the sensitivity to wind-speed variability is increased by about 70%. A zone between 40° and 60° latitudes in both the northern and southern hemispheres is found to be a major sink for atmospheric CO2. In these areas, poleward-flowing warm waters meet and mix with the cold subpolar waters rich in nutrients. The pCO2 in the surface water is decreased by the cooling effect on warm waters and by the biological drawdown of pCO2 in subpolar waters. High wind speeds over these low pCO2 waters increase the CO2 uptake rate by the ocean waters. The pCO2 in surface waters of the global oceans varies seasonally over a wide range of about 60% above and below the current atmospheric pCO2 level of about 360 ?atm. A global map showing the seasonal amplitude of surface-water pCO2 is presented. The effect of biological utilization of CO2 is differentiated from that of seasonal temperature changes using seasonal temperature data. The seasonal amplitude of surface-water pCO2 in high-latitude waters located poleward of about 40° latitude and in the equatorial zone is dominated by the biology effect, whereas that in the temperate gyre regions is dominated by the temperature effect. These effects are about 6 months out of phase. Accordingly, along the boundaries between these two regimes, they tend to cancel each other, forming a zone of small pCO2 amplitude. In the oligotrophic waters of the northern and southern temperate gyres, the biology effect is about 35 ?atm on average. This is consistent with the biological export flux estimated by Laws et al. (Glob. Biogeochem. Cycles 14 (2000) 1231). Small areas such as the northwestern Arabian Sea and the eastern equatorial Pacific, where seasonal upwelling occurs, exhibit intense seasonal changes in pCO2 due to the biological drawdown of CO2.

Influence of mesoscale eddies on new production in the Sargasso Sea

Abstract: It is problematic that geochemical estimates of new production - that fraction of total primary production in surface waters fueled by externally supplied nutrients - in oligotrophic waters of the open ocean surpass that which can be sustained by the traditionally accepted mechanisms of nutrient supply In the case of the Sargasso Sea, for example, these mechanisms account for less than half of the annual nutrient requirement indicated by new production estimates based on three independent transient-tracer techniques Specifically, approximately one-quarter to one-third of the annual nutrient requirement can be supplied by entrainment into the mixed layer during wintertime convection, with minor contributions from mixing in the thermocline and wind-driven transport (the potentially important role of nitrogen fixation - for which estimates vary by an order of magnitude in this region - is excluded from this budget) Here we present four lines of evidence - eddy-resolving model simulations, high-resolution observations from moored instrumentation, shipboard surveys, and satellite data - which suggest that the vertical flux of nutrients induced by the dynamics of mesoscale eddies is sufficient to balance the nutrient budget in the Sargasso Sea Additional information is contained in the original extended abstract

The marine viromes of four oceanic regions

Abstract: Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct “marine-ness” quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure.

Dinitrogen fixation in the world's oceans

Abstract: The surface water of the marine environment has traditionally been viewed as a nitrogen (N) limited habitat, and this has guided the development of conceptual biogeochemical models focusing largely on the reservoir of nitrate as the critical source of N to sustain primary productivity. However, selected groups of Bacteria, including cyanobacteria, and Archaea can utilize dinitrogen (N2) as an alternative N source. In the marine environment, these microorganisms can have profound effects on net community production processes and can impact the coupling of C-N-P cycles as well as the net oceanic sequestration of atmospheric carbon dioxide. As one component of an integrated ‘Nitrogen Transport and Transformations’ project, we have begun to re-assess our understanding of (1) the biotic sources and rates of N2 fixation in the world’s oceans, (2) the major controls on rates of oceanic N2 fixation, (3) the significance of this N2 fixation for the global carbon cycle and (4) the role of human activities in the alteration of oceanic N2 fixation. Preliminary results indicate that rates of N2 fixation, especially in subtropical and tropical open ocean habitats, have a major role in the global marine N budget. Iron (Fe) bioavailability appears to be an important control and is, therefore, critical in extrapolation to global rates of N2 fixation. Anthropogenic perturbations may alter N2 fixation in coastal environments through habitat destruction and eutrophication, and open ocean N2 fixation may be enhanced by warming and increased stratification of the upper water column. Global anthropogenic and climatic changes may also affect N2 fixation rates, for example by altering dust inputs (i.e. Fe) or by expansion of subtropical boundaries. Some recent estimates of global ocean N2 fixation are in the range of 100−200 Tg N (1−2 × 1014 g N) yr −1, but have large uncertainties. These estimates are nearly an order of magnitude greater than historical, pre-1980 estimates, but approach modern estimates of oceanic denitrification.