There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality.

Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

I and i

Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

Fast parallel algorithms for short-range molecular dynamics

다중혈관 관상동맥 환자에서 y-문합을 이용하여 양쪽 내흉동맥만을 사용한 우회술의 조기 성적

抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Single-layer metal dichalcogenides are two-dimensional semiconductors that present strong potential for electronic and sensing applications complementary to that of graphene.

/pdf/electronics-and-optoelectronics-of-two-dimensional-2jbqr1unvw.pdf

Electronics and optoelectronics of two-dimensional transition metal dichalcogenides.


 Background Compared to all other racial groups, black Americans are most likely to be diagnosed with colorectal cancer (CRC) and are most likely to die from the disease. These racial disparities have been largely attributed to social and economic conditions that impact the prevalence of co-morbidities and access to quality health care. However, the molecular and cellular differences in CRC tumors between black and white subjects remain largely uncharacterized. Methods We analyzed paired tumor and adjacent normal RNA sequencing reads collected from 15 black and 18 white subjects at Downstate Medical Center and Stony Brook University Hospital (DSSBU). 273 additional RNA sequencing and clinicopathologic data from The Cancer Genome Atlas (TCGA) were used as a validation cohort. In the TCGA dataset, 54 black subjects were propensity score matched to 108 white subjects by age, sex, tumor location and tumor stage. Differential expression analysis was performed with EdgeR and Wilcoxon rank-sum test, which was recently recommended for human population samples. Gene Ontology (GO) enrichment analysis of DEGs (absolute log 2-fold change > 1, adjust p value < 0.05) was performed using enrichR. Gene set enrichment analysis (GSEA) of hallmark gene sets was applied to the gene list ranked by fold changes. The TPM (transcript per million) data was used to estimate relative cell abundance via xCell. Antitumor immune response likelihood scores were generated via the Estimate Systems Immune Response (EaSIeR) R package. Results EdgeR analysis identified 15 and 80 DEGs in the DSSBU and TCGA datasets, respectively. Two DEGs, CXCL10 and RPPH1 have decreased expression while EEF1A1P13 has higher expression in black samples from both datasets. CXCL10 remained a DEG under the Wilcoxon test in the TCGA dataset and in propensity score matched samples. GO enrichment analysis identified “Chemokine-mediated signaling pathway” as a significantly different biological process between tumor groups with a FDR of 0.043 and 0.0004 in TCGA and DSSBU respectively. GSEA computed a negative enrichment score for IL6 JAK STAT3 signaling, Interferon alpha response, Interferon gamma response, Allograft rejection and Myc targets V1 in the black group from both datasets. xCell analysis of the DSSBU data revealed significant enrichment for endothelial cells, adipocytes and hematopoietic stem cells in black tumor samples, while white samples were significantly enriched for basophils, T helper 2 cells and common lymphoid progenitor cells. No significant differences in cell type enrichment were identified in the TCGA dataset. Predicted immunotherapy response scores were not significantly different between races in both cohorts. Conclusion Our results show differences in genes and pathways associated with inflammation and immune cell recruitment which may impact anti-tumor activity. Our future work will include experimental validation of interesting genes accounting for the differences.
 Citation Format: Dimitri F. Joseph, Ellen Li, Bin Chen, Joseph F. LaComb, Alexandra Guillaume. Deciphering molecular and cellular differences between black and white colorectal cancers through in-depth transcriptomic analyses [abstract]. In: Proceedings of the 15th AACR Conference on the Science of Cancer Health Disparities in Racial/Ethnic Minorities and the Medically Underserved; 2022 Sep 16-19; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Epidemiol Biomarkers Prev 2022;31(1 Suppl):Abstract nr A010.

Abstract A010: Deciphering molecular and cellular differences between black and white colorectal cancers through in-depth transcriptomic analyses

On higher moments of Dirichlet coefficients attached to symmetric square L-functions over certain sparse sequence

Objectives This is a protocol for a Cochrane Review (intervention). The objectives are as follows: To assess the effectiveness and safety of vitamin A supplements for preventing acute upper respiratory tract infections in children up to seven years of age. 

Oral vitamin A supplements to prevent acute upper respiratory tract infections in children up to seven years of age

Background Sturge-Weber syndrome (SWS) is a rare condition associated with a GNAQ gene mutation, which affects neural crest cells. A pulsed dye laser (PDL) is a first-line therapy for SWS, but its outcomes are worse than those in patients with port-wine stains (PWS). Photodynamic therapy (PDT) is a promising therapeutic option for PWS. However, its use for PWS associated with SWS has rarely been studied. Aims To investigate the therapeutic and adverse effects of photodynamic therapy in treating SWS-associated PWS. Methods Patients with SWS and matched patients with large size facial PWS were included in this study. Both colorimetric assessment and visual evaluation were conducted to evaluate patients' responses to treatment. Results Colorimetric assessment (blanching rate) and visual evaluation (scores of colour improvement) showed that after two PDT treatments, the SWS and PWS groups had similar treatment responses (21.2% vs. 29.8%; 3.39 vs. 3.65; P = 0.18, P = 0.37). However, there was a significant difference in efficacy between patients with SWS with and without a treatment history (12.4 and 34.9%, respectively; P = 0.02), as well as between patients with lesions located on the central and lateral faces (18.5 and 36.8%, respectively; P = 0.01). Both the SWS and PWS groups experienced minor adverse effects, and the frequency of these effects was not significantly different between the two groups. Limitation The study was limited by a small sample size and the possibility of later onset of glaucoma. In addition, false-negative magnetic resonance imaging screening results for SWS could not be ruled out due to the young age of some participants. Conclusion Photodynamic therapy is a safe and effective therapeutic option for SWS-associated PWS. Patients without a treatment history, and lesions on the lateral face, responded well, demonstrating good efficacy.

https://ijdvl.com/view-pdf/?&article=493b12b99d00e80803dd2b2f7512a84coGEI75H3ChLL9A==

Efficacy of hemoporfin-mediated photodynamic therapy in treating Sturge-Weber syndrome associated port-wine stains: A retrospective study.

In this paper, we propose an innovative method for measuring the thickness, flatness, and Abbe angle of a disc. This innovative method includes three laser distance meters and one standard plate. In general, the three laser distance meters are used to determine the thickness and flatness of a disc. The Abbe angle is determined using the laser distance meter and reference plate. Our analytical results show that the proposed method can be used to obtain the precise thickness and flatness of a disc. The resolution of the measurement method is 1 μm. The flatness is measured by the least squares method. The front and back laser distance meters simultaneously measure the warp and wrinkle. The maximum deviation of the measured thickness of a disc is reduced by using two laser distance meters to determine the effects of warp and wrinkle. The thickness, flatness, warp, and wrinkle of a disc are measured quickly and conveniently.

Mingwei Chen

Papers

Abstract A010: Deciphering molecular and cellular differences between black and white colorectal cancers through in-depth transcriptomic analyses

On higher moments of Dirichlet coefficients attached to symmetric square L-functions over certain sparse sequence

Oral vitamin A supplements to prevent acute upper respiratory tract infections in children up to seven years of age

Efficacy of hemoporfin-mediated photodynamic therapy in treating Sturge-Weber syndrome associated port-wine stains: A retrospective study.

Flatness and Thickness Measurements of Circular Plate Component Using Laser Distance Meter