Enzymes as catalysts in synthetic organic chemistry gained importance in the latter half of the 20th century, but nevertheless suffered from two major limitations. First, many enzymes were not accessible in large enough quantities for practical applications. The advent of recombinant DNA technology changed this dramatically in the late 1970s. Second, many enzymes showed a narrow substrate scope, often poor stereo- and/or regioselectivity and/or insufficient stability under operating conditions. With the development of directed evolution beginning in the 1990s and continuing to the present day, all of these problems can be addressed and generally solved. The present Perspective focuses on these and other developments which have popularized enzymes as part of the toolkit of synthetic organic chemists and biotechnologists. Included is a discussion of the scope and limitation of cascade reactions using enzyme mixtures in vitro and of metabolic engineering of pathways in cells as factories for the production o...

Biocatalysis in Organic Chemistry and Biotechnology: Past, Present, and Future

Biocatalysis has found numerous applications in various fields as an alternative to chemical catalysis. The use of enzymes in organic synthesis, especially to make chiral compounds for pharmaceuticals as well for the flavors and fragrance industry, are the most prominent examples. In addition, biocatalysts are used on a large scale to make specialty and even bulk chemicals. This review intends to give illustrative examples in this field with a special focus on scalable chemical production using enzymes. It also discusses the opportunities and limitations of enzymatic syntheses using distinct examples and provides an outlook on emerging enzyme classes.

/pdf/biocatalysis-enzymatic-synthesis-for-industrial-applications-ldqm2uv3af.pdf

Biocatalysis: Enzymatic Synthesis for Industrial Applications

All cellular processes are the results of synchronized actions of several intracellular biochemical pathways. Recent emphasis is to visualize such pathways using appropriate small molecular reagents, dye-labeled proteins, and genetically encoded fluorescent biosensors that produce a luminescence ON response either on selective binding or on reacting with an analyte that is produced through a specific biochemical/enzymatic transformation. Studying such enzymatic processes by probing the fluorescence response as the read-out signal is expected to provide important insights into crucial biochemical transformations induced by an enzyme in its native form. Many of such studies are extended for monitoring enzymatic transformations under in vitro or in vivo condition. A few of the recent reports reveal that such molecular probes are even capable of quantifying abnormal levels of enzymes in real-time and is linked to the key area of clinical diagnostics and chemical biology. A synchronized analysis of all such reports helps in developing a rationale for designing purpose-built molecular probes or chemodosimeters as well as newer reagents for studying crucial enzymatic process or quantification of the respective enzyme. In this review, an attempt will be there to highlight several recent bioimaging reagents and studies that have provided insights into crucial biochemical or enzymatic transformations.

Small Molecule as Fluorescent Probes for Monitoring Intracellular Enzymatic Transformations.

The anthropogenic inputs of hexavalent chromium [Cr(VI)] have increased enormously during the past few decades and has become a challenge for life on earth and hence removal of this carcinogen has become the need of the hour. Cr(VI) removal through common physicochemical techniques is highly expensive and inappropriate at low concentration. Microbial reduction of Cr(VI) to trivalent form is considered a favorable technique for Cr(VI) removal from wastewater, as it reduces the highly toxic form of Cr to less toxic form and therefore the article conveys essential fundamental information on removal of Cr(VI) by bacteria. For efficient bioremoval of Cr(VI),the main machinery of the process, the microbes, and their conditions, which decide the fate of this heavy metal, should be appropriate. Hence, the authors cover vast information about the isolation of chromium-resistant bacteria from various environment and their Cr(VI) resistance capability. An extensive report is given on information pertaining to the fa...

Chromium-Resistant Bacteria and Their Environmental Condition for Hexavalent Chromium Removal: A Review

Self-assemble peptide biomaterials and their biomedical applications

Hydroxynitrile lyases are valuable enzymes for asymmetric synthesis of cyanohydrins. These hydroxyl and nitrile–containing compounds are being used in production of very useful pharmaceuticals, agrochemicals, and other biologically active compounds using chemical or chemoenzymatic follow-up reactions in industry. Although a huge amount of information exists on the reaction parameters of these enzymes, including stability to pH and organic solvents, yield, reaction time, and valuable data on the enantiopurity of their products, cyanohydrins, there is a lack of update on the biochemistry, discovery, and engineering of the HNLs. Therefore, in the Introduction, we will have a look into these enzymes, cyanohydrins, and aldoxime-nitrile pathways. A brief view of functional groups and several examples of cyanohydrin-based chemicals and pharmaceuticals will also be described. Then we will present characteristics of many S- and R-selective HNLs with comparative tables for several enzymatic properties under biochem...

Hydroxynitrile Lyases: Insights into Biochemistry, Discovery, and Engineering

Ten moderately halophilic spore-forming bacilli were isolated from saline soils in Iran and their intrinsic high-level resistance to chromate, arsenate, tellurite, selenite, selenate and biselenite was identified by an agar dilution method. Minimum inhibitory concentration (MIC) for each oxyanion was determined. All isolates were resistant to higher concentrations of arsenate. The resistance level of the isolates to selenooxyanions was between 10 and 40 mM. Maximum and minimum tolerance against oxyanions was seen in selenite and biselenite, respectively. Although toxic metal resistance in the isolates was not different from non-halophilic bacteria that has been reported, unusual resistance to arsenate (250 mM), sodium chromate (75 mM) and potassium chromate (70 mM) was observed. The results obtained in this study revealed that all isolates were obviously susceptible to silver, nickel, zinc and cobalt, while seven isolates were resistant to lead. Susceptibility to copper and cadmium varied among the isolates. Silver had the maximum toxicity, whereas lead and copper showed minimum toxicity. The impact of salinity on the toxicity of oxyanions was also studied. Our results showed that in general an increase in salinity from 5% (w/v) to 15% (w/v) enhanced tolerance to toxic oxyanions.

Effect of Salinity on the Tolerance to Toxic Metals and Oxyanions in Native Moderately Halophilic Spore-forming Bacilli

Hydroxynitrile lyase (HNL) catalyzes the degradation of cyanohydrins and causes the release of hydrogen cyanide (cyanogenesis). HNL can enantioselectively produce cyanohydrins, which are valuable building blocks for the synthesis of fine chemicals and pharmaceuticals, and is used as an important biocatalyst in industrial biotechnology. Currently, HNLs are isolated from plants and bacteria. Because industrial biotechnology requires more efficient and stable enzymes for sustainable development, we must continuously explore other potential enzyme sources for the desired HNLs. Despite the abundance of cyanogenic millipedes in the world, there has been no precise study of the HNLs from these arthropods. Here we report the isolation of HNL from the cyanide-emitting invasive millipede Chamberlinius hualienensis, along with its molecular properties and application in biocatalysis. The purified enzyme displays a very high specific activity in the synthesis of mandelonitrile. It is a glycosylated homodimer protein and shows no apparent sequence identity or homology with proteins in the known databases. It shows biocatalytic activity for the condensation of various aromatic aldehydes with potassium cyanide to produce cyanohydrins and has high stability over a wide range of temperatures and pH values. It catalyzes the synthesis of (R)-mandelonitrile from benzaldehyde with a 99% enantiomeric excess, without using any organic solvents. Arthropod fauna comprise 80% of terrestrial animals. We propose that these animals can be valuable resources for exploring not only HNLs but also diverse, efficient, and stable biocatalysts in industrial biotechnology.

https://www.pnas.org/content/pnas/112/34/10605.full.pdf

Discovery and molecular and biocatalytic properties of hydroxynitrile lyase from an invasive millipede, Chamberlinius hualienensis

S-selective hydroxynitrile lyase from a plant Baliospermum montanum: molecular characterization of recombinant enzyme.

Low protein solubility of recombinantly expressed proteins in Escherichia coli is a major factor hindering their application and analysis. We generated highly in vivo soluble mutants of a hydroxynitrile lyase in E.coli using protein engineering. Structure-guided saturation mutagenesis caused high solubility of single Lys-Pro mutations at positions 176, 199 and 224 of this low soluble wild-type enzyme. The triple Lys-Pro mutant generated at these surface conserved residues showed up to 8-fold increase in specific activity in the cell-free extract. Random mutagenesis also created a mutant of His103Met with 18.5-fold increase. The main expression form was reversed from insoluble to the soluble fraction following both types of above-mentioned mutations in E.coli at 37°C. The findings challenge the rationale of producing recombinant proteins in this host at 37°C. Formerly wild type low soluble protein was then present as soluble protein by these mutations, which also elevated the total soluble protein fraction in E.coli. Saturation mutagenesis of His103 provided other highly soluble mutants with hydrophobic substitutions. These mutations caused only minor secondary structural changes as determined by circular dichroism and Fourier-transform infrared spectroscopy and affected catalytic efficiency slightly for the purified mutants (0.82-1.6-fold for benzaldehyde and 0.9-1.9-fold for mandelonitrile). The stability of the mutants was differed from that of the wild type at high temperatures and at pH >8. Exchanging the buried basic-polar residue His103 with hydrophobic amino acids is in line with the overall structure of the enzyme, i.e. having hydrophilic residues in solvent-exposed areas and hydrophobic residues in the core.

Functional expression of a plant hydroxynitrile lyase in Escherichia coli by directed evolution: creation and characterization of highly in vivo soluble mutants

Mohammad Dadashipour

Papers

Hydroxynitrile Lyases: Insights into Biochemistry, Discovery, and Engineering

Effect of Salinity on the Tolerance to Toxic Metals and Oxyanions in Native Moderately Halophilic Spore-forming Bacilli

Discovery and molecular and biocatalytic properties of hydroxynitrile lyase from an invasive millipede, Chamberlinius hualienensis

S-selective hydroxynitrile lyase from a plant Baliospermum montanum: molecular characterization of recombinant enzyme.

Functional expression of a plant hydroxynitrile lyase in Escherichia coli by directed evolution: creation and characterization of highly in vivo soluble mutants