There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality.

Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

I and i

抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

The emergence of order in natural systems is a constant source of inspiration for both physical and biological sciences. While the spatial order characterizing for example the crystals has been the basis of many advances in contemporary physics, most complex systems in nature do not offer such high degree of order. Many of these systems form complex networks whose nodes are the elements of the system and edges represent the interactions between them. 
Traditionally complex networks have been described by the random graph theory founded in 1959 by Paul Erdohs and Alfred Renyi. One of the defining features of random graphs is that they are statistically homogeneous, and their degree distribution (characterizing the spread in the number of edges starting from a node) is a Poisson distribution. In contrast, recent empirical studies, including the work of our group, indicate that the topology of real networks is much richer than that of random graphs. In particular, the degree distribution of real networks is a power-law, indicating a heterogeneous topology in which the majority of the nodes have a small degree, but there is a significant fraction of highly connected nodes that play an important role in the connectivity of the network. 
The scale-free topology of real networks has very important consequences on their functioning. For example, we have discovered that scale-free networks are extremely resilient to the random disruption of their nodes. On the other hand, the selective removal of the nodes with highest degree induces a rapid breakdown of the network to isolated subparts that cannot communicate with each other. 
The non-trivial scaling of the degree distribution of real networks is also an indication of their assembly and evolution. Indeed, our modeling studies have shown us that there are general principles governing the evolution of networks. Most networks start from a small seed and grow by the addition of new nodes which attach to the nodes already in the system. This process obeys preferential attachment: the new nodes are more likely to connect to nodes with already high degree. We have proposed a simple model based on these two principles wich was able to reproduce the power-law degree distribution of real networks. Perhaps even more importantly, this model paved the way to a new paradigm of network modeling, trying to capture the evolution of networks, not just their static topology.

/pdf/statistical-mechanics-of-complex-networks-1zfjpvxipu.pdf

Statistical mechanics of complex networks

Inspired by empirical studies of networked systems such as the Internet, social networks, and biological networks, researchers have in recent years developed a variety of techniques and models to help us understand or predict the behavior of these systems. Here we review developments in this field, including such concepts as the small-world effect, degree distributions, clustering, network correlations, random graph models, models of network growth and preferential attachment, and dynamical processes taking place on networks.

/pdf/the-structure-and-function-of-complex-networks-34deompc9l.pdf

The Structure and Function of Complex Networks

http://www.maths.qmul.ac.uk/%7Elatora/report_06.pdf

Complex networks: Structure and dynamics

Models of contagion arise broadly in both the biological and the social sciences, with applications ranging from the transmission of infectious diseases to the spread of cultural fads. In this Letter, we introduce a general model of contagion which, by explicitly incorporating memory of past exposures to, for example, an infectious agent, rumor, or new product, includes the main features of existing contagion models and interpolates between them. We obtain exact solutions for a simple version of the model, finding that under general conditions only three classes of collective dynamics exist. Furthermore, we find that, for a given length of memory, the class into which a particular system falls is determined by only two parameters. Our model suggests novel measures for assessing the susceptibility of a population to large contagion events, and also a possible strategy for inhibiting or facilitating them.

/pdf/universal-behavior-in-a-generalized-model-of-contagion-426fmc7zhn.pdf

Universal Behavior in a Generalized Model of Contagion

Re-examination of the "3/4-law" of metabolism.

We conduct a detailed investigation of correlations between real-time expressions of individuals made across the United States and a wide range of emotional, geographic, demographic, and health characteristics. We do so by combining (1) a massive, geo-tagged data set comprising over 80 million words generated in 2011 on the social network service Twitter and (2) annually-surveyed characteristics of all 50 states and close to 400 urban populations. Among many results, we generate taxonomies of states and cities based on their similarities in word use; estimate the happiness levels of states and cities; correlate highly-resolved demographic characteristics with happiness levels; and connect word choice and message length with urban characteristics such as education levels and obesity rates. Our results show how social media may potentially be used to estimate real-time levels and changes in population-scale measures such as obesity rates.

/pdf/the-geography-of-happiness-connecting-twitter-sentiment-and-2p5wps4vjm.pdf

The geography of happiness: connecting twitter sentiment and expression, demographics, and objective characteristics of place

We examine the scaling law $B \propto M^{\alpha}$ which connects organismal metabolic rate $B$ with organismal mass $M$, where $\alpha$ is commonly held to be 3/4. Since simple dimensional analysis suggests $\alpha=2/3$, we consider this to be a null hypothesis testable by empirical studies. We re-analyze data sets for mammals and birds compiled by Heusner, Bennett and Harvey, Bartels, Hemmingsen, Brody, and Kleiber, and find little evidence for rejecting $\alpha=2/3$ in favor of $\alpha=3/4$. For mammals, we find a possible breakdown in scaling for larger masses reflected in a systematic increase in $\alpha$. We also review theoretical justifications of $\alpha=3/4$ based on dimensional analysis, nutrient-supply networks, and four-dimensional biology. We find that present theories for $\alpha=3/4$ require assumptions that render them unconvincing for rejecting the null hypothesis that $\alpha=2/3$.

https://arxiv.org/pdf/physics/0007096.pdf

Peter Sheridan Dodds

Papers

Universal Behavior in a Generalized Model of Contagion

Re-examination of the "3/4-law" of metabolism.

The geography of happiness: connecting twitter sentiment and expression, demographics, and objective characteristics of place

Re-examination of the "3/4-law" of Metabolism

A generalized model of social and biological contagion.