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Philip J. Schmidt

Researcher at University of Waterloo

Publications -  26
Citations -  561

Philip J. Schmidt is an academic researcher from University of Waterloo. The author has contributed to research in topics: Computer science & Norovirus. The author has an hindex of 12, co-authored 25 publications receiving 414 citations. Previous affiliations of Philip J. Schmidt include University of Guelph & Public Health Agency of Canada.

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Estimating the burden of acute gastrointestinal illness due to Giardia, Cryptosporidium, Campylobacter, E. coli O157 and norovirus associated with private wells and small water systems in Canada.

TL;DR: This research supports the use of QMRA as an effective source attribution tool when there is a lack of randomized controlled trial data to evaluate the public health risk of an exposure source and provides a framework for others to develop burden of waterborne illness estimates for small water supplies.
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Norovirus Dose-Response: Are Currently Available Data Informative Enough to Determine How Susceptible Humans Are to Infection from a Single Virus?

Philip J. Schmidt
- 01 Jul 2015 - 
TL;DR: It was hypothesized that concurrent estimation of an unmeasured degree of virus aggregation and important dose‐response parameters could lead to structural nonidentifiability of the model, and this is demonstrated using the profile likelihood approach and by algebraic proof.
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Enhancing diversity analysis by repeatedly rarefying next generation sequencing data describing microbial communities

TL;DR: In this article, repeated rarefying is proposed as a tool to normalize library sizes for diversity analyses, which enables proportionate representation of all observed sequences and characterization of the random variation introduced to diversity analyses by rarefy to a smaller library size shared by all samples.
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Harnessing the theoretical foundations of the exponential and beta-Poisson dose-response models to quantify parameter uncertainty using Markov Chain Monte Carlo.

TL;DR: The theoretical origins of the beta-Poisson dose-response model are used to identify a decomposed version of the model that enables Bayesian analysis without the need to evaluate Kummer confluent hypergeometric functions and developed MCMC procedures to develop procedures to sample from posterior distributions describing uncertainty in the parameters of exponential and beta-Proof dose- response models using Bayes's theorem and Markov Chain Monte Carlo.
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QMRA and decision-making: are we handling measurement errors associated with pathogen concentration data correctly?

TL;DR: This model is used to demonstrate that microorganism counts and analytical recovery are not independent (as has often been assumed), even if the correlation is obscured by other sources of variability in the data, and is implemented in a Bayesian framework to quantify temporal concentration variability.