P
Pooya Mobadersany
Researcher at Northwestern University
Publications - 13
Citations - 918
Pooya Mobadersany is an academic researcher from Northwestern University. The author has contributed to research in topics: Medicine & Internal medicine. The author has an hindex of 5, co-authored 9 publications receiving 428 citations. Previous affiliations of Pooya Mobadersany include University of Tabriz & Emory University.
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Journal ArticleDOI
Predicting cancer outcomes from histology and genomics using convolutional networks
Pooya Mobadersany,Safoora Yousefi,Mohamed Amgad,David A. Gutman,Jill S. Barnholtz-Sloan,José E. Velázquez Vega,Daniel J. Brat,Lee Cooper,Lee Cooper +8 more
TL;DR: A computational approach based on deep learning to predict the overall survival of patients diagnosed with brain tumors from microscopic images of tissue biopsies and genomic biomarkers, which surpasses the prognostic accuracy of human experts using the current clinical standard for classifying brain tumors.
Posted ContentDOI
Predicting cancer outcomes from histology and genomics using convolutional networks
Pooya Mobadersany,Safoora Yousefi,Mohamed Amgad,David A. Gutman,Jill S. Barnholtz-Sloan,José E. Velázquez Vega,Daniel J. Brat,Lee Cooper +7 more
TL;DR: This study illustrates how this approach can integrate information from both histology images and genomic biomarkers to predict time-to-event patient outcomes, and demonstrates performance surpassing the current clinical paradigm for predicting the survival of patients diagnosed with glioma.
Posted Content
NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation.
Mohamed Amgad,Lamees A. Atteya,Hagar Hussein,Kareem Hosny Mohammed,Ehab O A Hafiz,Maha A. T. Elsebaie,Ahmed M. Alhusseiny,Mohamed Atef AlMoslemany,Abdelmagid M Elmatboly,Philip A. Pappalardo,Rokia Adel Sakr,Pooya Mobadersany,Ahmad Rachid,Anas M. Saad,Ahmad M Alkashash,Inas A. Ruhban,Anas Alrefai,Nada M. Elgazar,Ali Abdulkarim,Abo-Alela Farag,Amira Etman,Ahmed G. Elsaeed,Yahya Alagha,Yomna A. Amer,Ahmed M. Raslan,Menatalla K. Nadim,Mai A. T. Elsebaie,Ahmed Ayad,Liza E. Hanna,Ahmed Gadallah,Mohamed Elkady,Bradley Drumheller,David L. Jaye,David E. Manthey,David A. Gutman,Habiba Elfandy,Lee Cooper +36 more
TL;DR: An approach for engaging crowds of medical students and pathologists that was used to produce a dataset of over 220,000 annotations of cell nuclei in breast cancers is described and it is shown how suggested Annotations generated by a weak algorithm can improve the accuracy of annotations generated by non-experts and can yield useful data for training segmentation algorithms without laborious manual tracing.
Journal ArticleDOI
NuCLS: A scalable crowdsourcing approach and dataset for nucleus classification and segmentation in breast cancer
Mohamed Amgad,Lamees A. Atteya,Hagar Hussein,Kareem Hosny Mohammed,Ehab Hafiz,Maha A. T. Elsebaie,Ahmed M. Alhusseiny,Mohamed Atef AlMoslemany,Abdelmagid M Elmatboly,Philip A. Pappalardo,Rokia Adel Sakr,Pooya Mobadersany,Ahmad Rachid,Anas M. Saad,Ahmad M Alkashash,Inas A. Ruhban,Anas Alrefai,Nada M. Elgazar,Ali Mohammed Abdulkarim.,Abo-Alela Farag,Amira Etman,Ahmed G. Elsaeed,Yahya Alagha,Yomna A. Amer,Ahmed M. Raslan,Menatalla K. Nadim,Mai A. T. Elsebaie,Ahmed Ayad,Liza E. Hanna,Ahmed Gadallah,Mohamed Elkady,Bradley Drumheller,David L. Jaye,David E. Manthey,David H. Gutmann,Habiba Elfandy,Lee Cooper +36 more
TL;DR: A novel collaborative framework for engaging crowds of medical students and pathologists to produce quality labels for cell nuclei and results indicate that even noisy algorithmic suggestions do not adversely affect pathologist accuracy and can help non-experts improve annotation quality.
Journal ArticleDOI
GestAltNet: aggregation and attention to improve deep learning of gestational age from placental whole-slide images
TL;DR: GestaltNet as discussed by the authors uses human-like behaviors of attention and aggregation to estimate the gestational age (GA) of scanned placental slides and compared it to a baseline model lacking the attention and aggregated functions.