抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Stochastic thermodynamics as reviewed here systematically provides a framework for extending the notions of classical thermodynamics such as work, heat and entropy production to the level of individual trajectories of well-defined non-equilibrium ensembles. It applies whenever a non-equilibrium process is still coupled to one (or several) heat bath(s) of constant temperature. Paradigmatic systems are single colloidal particles in time-dependent laser traps, polymers in external flow, enzymes and molecular motors in single molecule assays, small biochemical networks and thermoelectric devices involving single electron transport. For such systems, a first-law like energy balance can be identified along fluctuating trajectories. For a basic Markovian dynamics implemented either on the continuum level with Langevin equations or on a discrete set of states as a master equation, thermodynamic consistency imposes a local-detailed balance constraint on noise and rates, respectively. Various integral and detailed fluctuation theorems, which are derived here in a unifying approach from one master theorem, constrain the probability distributions for work, heat and entropy production depending on the nature of the system and the choice of non-equilibrium conditions. For non-equilibrium steady states, particularly strong results hold like a generalized fluctuation–dissipation theorem involving entropy production. Ramifications and applications of these concepts include optimal driving between specified states in finite time, the role of measurement-based feedback processes and the relation between dissipation and irreversibility. Efficiency and, in particular, efficiency at maximum power can be discussed systematically beyond the linear response regime for two classes of molecular machines, isothermal ones such as molecular motors, and heat engines such as thermoelectric devices, using a common framework based on a cycle decomposition of entropy production. (Some figures may appear in colour only in the online journal) This article was invited by Erwin Frey.

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Stochastic thermodynamics, fluctuation theorems and molecular machines

Permanently cross-linked materials have outstanding mechanical properties and solvent resistance, but they cannot be processed and reshaped once synthesized Non–cross-linked polymers and those with reversible cross-links are processable, but they are soluble We designed epoxy networks that can rearrange their topology by exchange reactions without depolymerization and showed that they are insoluble and processable Unlike organic compounds and polymers whose viscosity varies abruptly near the glass transition, these networks show Arrhenius-like gradual viscosity variations like those of vitreous silica Like silica, the materials can be wrought and welded to make complex objects by local heating without the use of molds The concept of a glass made by reversible topology freezing in epoxy networks can be readily scaled up for applications and generalized to other chemistries

Silica-Like Malleable Materials from Permanent Organic Networks

Cells are organized on length scales ranging from angstrom to micrometres. However, the mechanisms by which angstrom-scale molecular properties are translated to micrometre-scale macroscopic properties are not well understood. Here we show that interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution. This macroscopic transition corresponds to a molecular transition between small complexes and large, dynamic supramolecular polymers. The concentrations needed for phase transition are directly related to the valency of the interacting species. In the case of the actin-regulatory protein called neural Wiskott-Aldrich syndrome protein (N-WASP) interacting with its established biological partners NCK and phosphorylated nephrin, the phase transition corresponds to a sharp increase in activity towards an actin nucleation factor, the Arp2/3 complex. The transition is governed by the degree of phosphorylation of nephrin, explaining how this property of the system can be controlled to regulatory effect by kinases. The widespread occurrence of multivalent systems suggests that phase transitions may be used to spatially organize and biochemically regulate information throughout biology.

/pdf/phase-transitions-in-the-assembly-of-multivalent-signalling-1407v3k58p.pdf

Phase transitions in the assembly of multivalent signalling proteins

Emulsions stabilized with solid nanoparticles: Pickering emulsions

We have studied oil-in-water emulsions stabilized by monodisperse, fluorescent silica colloids presenting either a smooth or a rough surface. The presence of the fluorescent core allows for direct visualization of the colloids on the surface of the emulsion droplets. Droplet interfacial tension, measured by micropipet tensiometry, is not modified by particle adsorption at the interface, suggesting a purely steric stabilization mechanism. Surface roughness is shown to considerably lessen the ability of particles to stabilize droplets. At variance with what is commonly assumed, no straightforward relation exists between the extent of particle interfacial adsorption and emulsion macroscopic stability; stable emulsions can be obtained even with very low droplet surface coverage. Finally, we directly monitor the Brownian motion of the adsorbed particles, showing that their surface diffusion coefficient is very close to the bulk value. Evidence of a possible role of particle surface dynamics on the stabilizatio...

Pickering Emulsions: Interfacial Tension, Colloidal Layer Morphology, and Trapped-Particle Motion

Thermophoresis is particle motion induced by thermal gradients Akin to other driven transport processes, such as the Soret effect in simple fluid mixtures, or electrophoresis and diffusiophoresis in colloidal suspensions, it is, both experimentally and theoretically, a challenging subject Rather than being a comprehensive recollection, this review aims to be a critical re-examination of the experimental and theoretical tools used to investigate thermophoresis, and of some recent relevant results that may unravel novel aspects of colloid solvation forces The perspectives of thermophoresis as a tool for particle manipulation in microfluidics are also emphasized

https://iopscience.iop.org/article/10.1088/0953-8984/20/15/153102/pdf

Thermophoresis in colloidal suspensions

We show that a large set of nanofluid thermal conductivity data falls within the upper and lower Maxwell bounds for homogeneous systems. This indicates that the thermal conductivity of nanofluids is largely dependent on whether the nanoparticles stay dispersed in the base fluid, form large aggregates, or assume a percolating,fractal confguration. The experimental data, which are strikingly analogous to those in most solid composites and liquid mixtures, provide strong evidence for the classical nature of thermal conduction in nanofluids.

The Classical Nature of Thermal Conduction in Nanofluids

Thermophoresis is particle motion induced by thermal gradients. Akin to other nonequilibrium transport processes such as thermal diffusion in fluid mixtures, it is both experimentally and theoretically a challenging subject. New insights stemming from careful experimental surveys and strict theoretical models have however shed light on the underlying physical mechanisms, enabling depiction of thermophoresis as a subtle interfacial effect. These recent advancements open up alluring perspectives to exploit thermophoresis as a novel tool in macromolecular fractionation, microfluidic manipulation, and selective tuning of colloidal structures.

Thermophoresis: moving particles with thermal gradients

Thermophoresis is particle drift induced by a temperature gradient. By measuring the full temperature dependence of this effect for polystyrene latex suspensions, we show that the thermophoretic mobility (or "thermal diffusion coefficient") D(T) is basically independent on particle size, in particular, when the interfacial properties of the colloidal particles are carefully standardized by adsorbing a surfactant layer on the particle surface. Even more, all investigated systems show values of D(T) which are very close to those measured for simple micellar solutions of the adsorbed surfactant. Our findings could be of relevance for downsizing microfluidics to the nanometric range.

Roberto Piazza

Papers

Pickering Emulsions: Interfacial Tension, Colloidal Layer Morphology, and Trapped-Particle Motion

Thermophoresis in colloidal suspensions

The Classical Nature of Thermal Conduction in Nanofluids

Thermophoresis: moving particles with thermal gradients

Does thermophoretic mobility depend on particle size