Epidemiology and surveillance of colorectal polyps.

Mycobacterium bovis causes bovine tuberculosis and is the main organism responsible for zoonotic tuberculosis in humans. We performed the sequencing, assembly and annotation of a Brazilian strain of M. bovis named SP38, and performed comparative genomics of M. bovis genomes deposited in GenBank. M. bovis SP38 has a traditional tuberculous mycobacterium genome of 4,347,648 bp, with 65.5% GC, and 4,216 genes. The majority of CDSs (2,805, 69.3%) have predictive function, while 1,206 (30.07%) are hypothetical. For comparative analysis, 31 M. bovis, 32 M. bovis BCG, and 23 Mycobacterium tuberculosis genomes available in GenBank were selected. M. bovis RDs (regions of difference) and Clonal Complexes (CC) were identified in silico. Genome dynamics of bacterial groups were analyzed by gene orthology and polymorphic sites identification. M. bovis polymorphic sites were used to construct a phylogenetic tree. Our RD analyses resulted in the exclusion of three genomes, mistakenly annotated as virulent M. bovis. M. bovis SP38 along with strain 35 represent the first report of CC European 2 in Brazil, whereas two other M. bovis strains failed to be classified within current CC. Results of M. bovis orthologous genes analysis suggest a process of genome remodeling through genomic decay and gene duplication. Quantification, pairwise comparisons and distribution analyses of polymorphic sites demonstrate greater genetic variability of M. tuberculosis when compared to M. bovis and M. bovis BCG (p ≤ 0.05), indicating that currently defined M. tuberculosis lineages are more genetically diverse than M. bovis CC and animal-adapted MTC (M. tuberculosis Complex) species. As expected, polymorphic sites annotation shows that M. bovis BCG are subjected to different evolutionary pressures when compared to virulent mycobacteria. Lastly, M. bovis phylogeny indicates that polymorphic sites may be used as markers of M. bovis lineages in association with CC. Our findings highlight the need to better understand host-pathogen co-evolution in genetically homogeneous and/or diverse host populations, considering the fact that M. bovis has a broader host range when compared to M. tuberculosis. Also, the identification of M. bovis genomes not classified within CC indicates that the diversity of M. bovis lineages may be larger than previously thought or that current classification should be reviewed.

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Complete Genome Sequencing of Mycobacterium bovis SP38 and Comparative Genomics of Mycobacterium bovis and M. tuberculosis Strains.

Semina: Ciências Agrárias, Londrina, v. 19, n. 1, mar. 1998

The study was carried out to evaluate the effectiveness of the vaccination program against bovine brucellosis, implemented by the State of Rondonia, using prevalence rates as an indicator. The State was divided into three regions. For each region, a pre-determined number of herds were selected and at each herds, blood samples were collected from randomly chosen females with 24 months age or more. Sera from animals were submitted to a serial testing protocol, with screening performed using the buffered acidified antigen test and confirmation by the complement fixation test. A epidemiological questionnaire was administered to each farm property to identify the risk factors associated with the disease. The prevalence rates of infected herds and infected animal at the state were 12.3% [10.3–14.6] and was 1.9% [1.4–2.5], respectively. Between the regions, the prevalence of infected herds varied from 11.6% to 12.8% and the prevalence of infected animals ranged between 1.4% and 2.6%. Bovine brucellosis in Rondonia State is associated with the beef herd, a larger number of cows and the presence of flooded pastures. There was an important reduction in prevalence rates of infected herds and infected animals since 2004, however further reduction could still be achieved with vaccination. Thus, the State should continue its vaccination program, placing emphasis on ensuring the quality of the process. In addition, it should also promote the use of a vaccine that does not induce antibody formation. Additionally, the State must carry out a great effort of education so that producers test breeding animals for brucellosis before introducing them onto their properties and, where possible, prevent calved cows from having access to areas that are flooded.

Effect of vaccination in lowering bovine brucellosis in the State of Rondônia, Brazil

A study was conducted to determine the epidemiological status of bovine tuberculosis in the state of Rio Grande do Sul. The state was divided in seven regions, and in each of them, a pre-established number of farms was randomly sampled. In each farm, cows with age equal to or greater than 24 months were selected at random and submitted to the comparative cervical tuberculin test. The animals whose tests were inconclusive were retested with the same diagnostic procedure within a minimum interval of 60 days. In all, 9,895 animals from 1,067 farms were tested. An epidemiological questionnaire was applied in the farms in order to identify risk factors associated with bovine tuberculosis. The prevalence of infected herds in the state was 2.8% [1.8; 4.0] and that of infected animals was 0.7% [0.4; 1.0]. There was a trend towards a concentration of infected herds in the northern part of the state, with a predominance of dairy and mixed herds. The risk factors associated with the condition of infected herds were being a dairy herd (OR = 2.90 [1.40; 6.13]) and herds with 16 or more cows (OR = 2.61 [1.20; 5.49]). Thus, the best strategy to be adopted by the state is the implementation of surveillance systems to detect and remediate the infected herds, preferably incorporating elements of risk-based surveillance. In addition, the state must carry out a solid action of health education so that the producers test animals for bovine tuberculosis before introducing them in their herds.

Epidemiological status of bovine tuberculosis in the state of Rio Grande do Sul, Brazil Situação epidemiológica da tuberculose bovina no Estado do Rio Grande do Sul, Brasil

A cross sectional study was carried out between May and November 2011 to investigate the epidemiological situation of bovine tuberculosis (bTB) in the state of Sao Paulo, Brazil. The state was divided into seven regions. Three hundred farms from each region, with reproductive activity, were randomly chosen and included as primary sample units. A fixed number of bovine females, older than 2 years of age, were randomly selected and tested, using the comparative cervical tuberculin test. An epidemiological questionnaire based survey was conducted in the selected farms. Our results show that in the state of Sao Paulo, the apparent prevalence of positive farms was 9% (95% confidence interval, 95% CI = 7.8 – 10.5%). The prevalence in the individual regions varied between 3.5% (95% CI = 1.7 ? 6.8%) and 13.9% (95% CI = 10.2 – 18.8%). The apparent prevalence of positive animals in the state was 1.3% (95% CI = 0.9 – 1.7%) and varied from 0.3% (95% CI = 0.2 – 0.6%) to 2.5% (95% CI = 1.4 – 4.5%) in the regions. The risk factors associated with tuberculosis in the state were (i) number of adult females in a herd is ? 24 (Odds ratio, OR = 1.91, 95% CI = 1.32 – 2.75), (ii) type of farm enterprise (dairy: OR = 2.70, 95% CI = 1.40 – 5.21; mixed: OR = 2.03, 95% CI = 1.08 – 3.82), (iii) milking process (milking parlor: OR = 4.12, 95% CI = 1.46 – 11.64; portable milking machine: OR = 2.94, 95% CI = 1.42 – 6.09), and (iv) pasture sharing (OR = 1.58, 95% CI = 1.07 – 2.33). The state of Sao Paulo should implement a structured surveillance system to detect and mitigate the disease. Further, an efficient animal health education program, which encourages the farmers to test replacement animals for bTB prior to introduction in their herds and to avoid pasture sharing with farms of unknown sanitary conditions should also be implemented.

Prevalence and risk factors for bovine tuberculosis in the State of São Paulo, Brazil

A cross- sectional study was carried out, between May and November 2011, to estimate the situation of the bovine brucellosis in Sao Paulo State, 10 years after the commencement of the vaccination of the heifers with the S19 strain. The State was divided into seven regions and in each of them, 300 farms with reproductive activity were randomly chosen and considered as primary sample units. A fixed number of cows was randomly selected and tested for antibodies against Brucella spp. A farm was considered infected if at least one female tested positive. In the selected farms, an epidemiological questionnaire was administered which focused on herd traits as well as husbandry and sanitary practices that could be associated with the risk of infection. The prevalence (percentile, [95% confidence interval]) of infected herds was 10.2% [8.8-11.8] for the State, and for the regions, it varied from 7.3% [4.7-11.2] to 12.3% [8.8-16.8], not showing significant difference between different regions. The apparent prevalence of positive farms in the State and regions remained similar to the prevalence observed 10 years before. The prevalence of positive animals was 2.4% [1.8-3.1] in the State and varied from 1.1% [0.6-2] to 3.5% [1.7-7.1] in the regions, not showing significant difference between regions. Again, there was no difference in the prevalence of positive animals after 10 years of the vaccination program. The risk factors (odds ratio, 95% confidence interval) associated with bovine brucellosis in the State included number of cows ≥ 24 (3.08, 2.22-4.27) and the acquisition of breeding animals (1.33, 0.95-1.87). The Sao Paulo State should conduct systematic vaccination coverage of above 80% of the eligible heifers with the S19 strain vaccine annually. Moreover, the State should emphatically use RB51 strain vaccine in females above 8 months of age not vaccinated with S19 strain vaccine. An efficient animal health education program to orientate farmers to test replacement animals for brucellosis prior to introduction in their herds should also be implemented.

Controlling bovine brucellosis in the state of São Paulo, Brazil: results after ten years of a vaccination program Controle da brucelose bovina no estado de São Paulo, Brasil: resultados após dez anos do programa de vacinação

A cross- sectional study was carried out, between May and November 2011, to estimate the situation of the bovine brucellosis in Sao Paulo State, 10 years after the commencement of the vaccination of the heifers with the S19 strain. The State was divided into seven regions and in each of them, 300 farms with reproductive activity were randomly chosen and considered as primary sample units. A fixed number of cows was randomly selected and tested for antibodies against Brucella spp. A farm was considered infected if at least one female tested positive. In the selected farms, an epidemiological questionnaire was administered which focused on herd traits as well as husbandry and sanitary practices that could be associated with the risk of infection. The prevalence (percentile, [95% confidence interval]) of infected herds was 10.2% [8.8-11.8] for the State, and for the regions, it varied from 7.3% [4.7-11.2] to 12.3% [8.8-16.8], not showing significant difference between different regions. The apparent prevalence of positive farms in the State and regions remained similar to the prevalence observed 10 years before. The prevalence of positive animals was 2.4% [1.8-3.1] in the State and varied from 1.1% [0.6-2] to 3.5% [1.7-7.1] in the regions, not showing significant difference between regions. Again, there was no difference in the prevalence of positive animals after 10 years of the vaccination program. The risk factors (odds ratio, 95% confidence interval) associated with bovine brucellosis in the State included number of cows ? 24 (3.08, 2.22-4.27) and the acquisition of breeding animals (1.33, 0.95-1.87). The Sao Paulo State should conduct systematic vaccination coverage of above 80% of the eligible heifers with the S19 strain vaccine annually. Moreover, the State should emphatically use RB51 strain vaccine in females above 8 months of age not vaccinated with S19 strain vaccine. An efficient animal health education program to orientate farmers to test replacement animals for brucellosis prior to introduction in their herds should also be implemented.

http://repositorio.unicamp.br/jspui/bitstream/REPOSIP/323729/1/2-s2.0-84995931526.pdf

Rodrigo de Souza Ferreira

Papers

Prevalence and risk factors for bovine tuberculosis in the State of São Paulo, Brazil

Controlling bovine brucellosis in the state of São Paulo, Brazil: results after ten years of a vaccination program Controle da brucelose bovina no estado de São Paulo, Brasil: resultados após dez anos do programa de vacinação

Controlling Bovine Brucellosis In The State Of São Paulo, Brazil: Results After Ten Years Of A Vaccination Program