R
Rolf Mueller
Researcher at D. E. Shaw Research
Publications - 4
Citations - 1634
Rolf Mueller is an academic researcher from D. E. Shaw Research. The author has contributed to research in topics: Massively parallel & Parallel algorithm. The author has an hindex of 4, co-authored 4 publications receiving 1438 citations.
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Journal ArticleDOI
Anton, a special-purpose machine for molecular dynamics simulation
David E. Shaw,Martin M. Deneroff,Ron O. Dror,Jeffrey S. Kuskin,Richard H. Larson,John K. Salmon,Cliff Young,Brannon Batson,Kevin J. Bowers,Jack C. Chao,Michael P. Eastwood,Joseph Gagliardo,J. P. Grossman,C. Richard Ho,Douglas J. Ierardi,István Kolossváry,John L. Klepeis,Timothy Layman,Christine McLeavey,Mark A. Moraes,Rolf Mueller,Edward C. Priest,Yibing Shan,Jochen Spengler,Michael Theobald,Brian Towles,Stanley C. Wang +26 more
TL;DR: A massively parallel machine called Anton is described, which should be capable of executing millisecond-scale classical MD simulations of such biomolecular systems and has been designed to use both novel parallel algorithms and special-purpose logic to dramatically accelerate those calculations that dominate the time required for a typical MD simulation.
Proceedings ArticleDOI
Anton 2: raising the bar for performance and programmability in a special-purpose molecular dynamics supercomputer
David E. Shaw,J. P. Grossman,Joseph A. Bank,Brannon Batson,J. Adam Butts,Jack C. Chao,Martin M. Deneroff,Ron O. Dror,Amos Even,Christopher H. Fenton,Anthony Forte,Joseph Gagliardo,Gennette Gill,Brian Greskamp,C. Richard Ho,Douglas J. Ierardi,Lev Iserovich,Jeffrey S. Kuskin,Richard H. Larson,Timothy Layman,Li-Siang Lee,Adam Lerer,Chester Li,Daniel Killebrew,Kenneth M. Mackenzie,Shark Yeuk-Hai Mok,Mark A. Moraes,Rolf Mueller,Lawrence J. Nociolo,Jon L. Peticolas,Terry Quan,Daniel Ramot,John K. Salmon,Daniele Paolo Scarpazza,U. Ben Schafer,Naseer Siddique,Christopher W. Snyder,Jochen Spengler,Ping Tak Peter Tang,Michael Theobald,Horia Toma,Brian Towles,Benjamin Vitale,Stanley C. Wang,Cliff Young +44 more
TL;DR: The architecture of Anton 2 is tailored for fine-grained event-driven operation, which improves performance by increasing the overlap of computation with communication, and also allows a wider range of algorithms to run efficiently, enabling many new software-based optimizations.
Proceedings ArticleDOI
Anton, a special-purpose machine for molecular dynamics simulation
David E. Shaw,Martin M. Deneroff,Ron O. Dror,Jeffrey S. Kuskin,Richard H. Larson,John K. Salmon,Cliff Young,Brannon Batson,Kevin J. Bowers,Jack C. Chao,Michael P. Eastwood,Joseph Gagliardo,J. P. Grossman,C. Richard Ho,Douglas J. Ierardi,István Kolossváry,John L. Klepeis,Timothy Layman,Christine McLeavey,Mark A. Moraes,Rolf Mueller,Edward C. Priest,Yibing Shan,Jochen Spengler,Michael Theobald,Brian Towles,Stanley C. Wang +26 more
TL;DR: A massively parallel machine called Anton is described, which should be capable of executing millisecond-scale classical MD simulations of such biomolecular systems and is designed to use both novel parallel algorithms and special-purpose logic to dramatically accelerate those calculations that dominate the time required for a typical MD simulation.
Proceedings ArticleDOI
Hierarchical simulation-based verification of Anton, a special-purpose parallel machine
J. P. Grossman,John K. Salmon,C.R. Ho,Douglas J. Ierardi,Brian Towles,Brannon Batson,Jochen Spengler,Stanley C. Wang,Rolf Mueller,Michael Theobald,Cliff Young,Joseph Gagliardo,Martin M. Deneroff,Ron O. Dror,David E. Shaw +14 more
TL;DR: This work verified the long-term numerical stability of computations on Anton by using a hierarchy of RTL, architectural, and numerical simulations, which created a continuous verification chain from molecular dynamics to individual logic gates.