S
Savvas Paragkamian
Researcher at University of Crete
Publications - 8
Citations - 53
Savvas Paragkamian is an academic researcher from University of Crete. The author has contributed to research in topics: Computer science & Biology. The author has an hindex of 1, co-authored 5 publications receiving 6 citations.
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Journal ArticleDOI
0s and 1s in marine molecular research: a regional HPC perspective.
Haris Zafeiropoulos,Anastasia Gioti,Stelios Ninidakis,Antonis Potirakis,Savvas Paragkamian,Nelina Angelova,Aglaia Antoniou,Theodoros Danis,Eliza Kaitetzidou,Panagiotis Kasapidis,Jon Bent Kristoffersen,Vasileios Papadogiannis,Christina Pavloudi,Quoc Viet Ha,Jacques Lagnel,Nikos Pattakos,Giorgos Perantinos,Dimitris Sidirokastritis,Panagiotis Vavilis,Georgios Kotoulas,Tereza Manousaki,Elena Sarropoulou,Costas S. Tsigenopoulos,Christos Arvanitidis,Antonios Magoulas,Evangelos Pafilis +25 more
TL;DR: In this paper, the authors present a Tier 2 (regional) HPC facility, operating for over a decade at the Institute of Marine Biology, Biotechnology, and Aquaculture of the Hellenic Centre for Marine Research in Greece.
Journal ArticleDOI
Coupling beach ecology and macroplastics litter studies: Current trends and the way ahead.
TL;DR: In this paper, a textural co-occurrence analysis was applied to published scientific literature to assess current and future dominant trends, directions and priorities in beach litter assessment, and three approaches were proposed to overcome the research limits highlighted: the unequivocation of terms, the consideration of adequate scales, and the attention to dynamics rather than just patterns.
Journal ArticleDOI
PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types
Haris Zafeiropoulos,Savvas Paragkamian,Stelios Ninidakis,Georgios A. Pavlopoulos,Lars Juhl Jensen,Evangelos Pafilis +5 more
TL;DR: The PREGO knowledge base as mentioned in this paper combines text mining and data integration techniques to mine such what-where-who associations from data and metadata scattered in the scientific literature and in public omics repositories.
Journal ArticleDOI
OnTheFly 2.0 : a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis.
Fotis A. Baltoumas,Sofia Zafeiropoulou,Evangelos Karatzas,Savvas Paragkamian,Foteini Thanati,Ioannis Iliopoulos,Aristides G. Eliopoulos,Reinhard Schneider,Lars Juhl Jensen,Evangelos Pafilis,Georgios A. Pavlopoulos +10 more
TL;DR: OnTheFly2.0 as discussed by the authors is a web application for extracting biomedical entities from individual files such as plain texts, office documents, PDF files or images, and it uses the EXTRACT tagging service to perform named entity recognition (NER) for genes/proteins, chemical compounds, organisms, tissues, environments, diseases, phenotypes and gene ontology terms.
Posted ContentDOI
OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis
Fotis A. Baltoumas,Sofia Zafeiropoulou,Evangelos Karatzas,Savvas Paragkamian,Foteini Thanati,Ioannis Iliopoulos,Aristides G. Eliopoulos,Aristides G. Eliopoulos,Reinhard Schneider,Lars Juhl Jensen,Evangelos Pafilis,Georgios A. Pavlopoulos +11 more
TL;DR: Pavlopoulos et al. as discussed by the authors presented OnTheFly2.0, a web application for extracting biomedical entities from individual files such as plain texts, Office documents, PDF files or images.