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Stephanie M. Linker
Researcher at ETH Zurich
Publications - 13
Citations - 214
Stephanie M. Linker is an academic researcher from ETH Zurich. The author has contributed to research in topics: Gene & Membrane. The author has an hindex of 5, co-authored 10 publications receiving 116 citations. Previous affiliations of Stephanie M. Linker include European Bioinformatics Institute & Boehringer Ingelheim.
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Journal ArticleDOI
Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity
Stephanie M. Linker,Lara Urban,Stephen J. Clark,Mariya Chhatriwala,Shradha Amatya,Davis J. McCarthy,Ingo Ebersberger,Ludovic Vallier,Ludovic Vallier,Wolf Reik,Wolf Reik,Wolf Reik,Oliver Stegle,Oliver Stegle,Marc Jan Bonder +14 more
TL;DR: This study applies parallel DNA methylation and transcriptome sequencing to differentiating human induced pluripotent stem cells to characterize splicing variation (exon skipping) and its determinants and reveals a previously underappreciated link betweenDNA methylation variation and splicing.
Journal ArticleDOI
Bacterial Glycogen Provides Short-Term Benefits in Changing Environments.
Karthik Sekar,Stephanie M. Linker,Jen Nguyen,Jen Nguyen,Alix Grünhagen,Roman Stocker,Uwe Sauer +6 more
TL;DR: Real-time metabolomics and single-cell imaging are used to demonstrate that the internal storage polymer glycogen plays a crucial role in the dynamic physiological adaptation of Escherichia coli to fluctuating nutrients following carbon starvation, highlighting an underappreciated role of glycogen in rapidly providing carbon and energy in changing environments, thereby increasing survival and competition capabilities under fluctuations and nutrient-poor conditions.
Journal ArticleDOI
Carbon Nanotubes Mediate Fusion of Lipid Vesicles
Ramachandra M. Bhaskara,Stephanie M. Linker,Martin Vögele,Jürgen Köfinger,Gerhard Hummer,Gerhard Hummer +5 more
TL;DR: It is shown that membrane-spanning carbon nanotubes (CNTs) can trigger spontaneous fusion of small lipid vesicles, and the distinct mechanism of CNT-mediated membrane fusion may be transferable, providing guidance in the development of fusion agents, e.g., for the targeted delivery of drugs or nucleic acids.
Posted ContentDOI
Combined single cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity
Stephanie M. Linker,Lara Urban,Stephen J. Clark,Mariya Chhatriwala,Shradha Amatya,Davis J. McCarthy,Ingo Ebersberger,Ludovic Vallier,Wolf Reik,Oliver Stegle,Marc Jan Bonder +10 more
TL;DR: This study yields new insights into alternative splicing at the single-cell level and reveals a previously underappreciated link between DNA methylation variation and splicing.
Journal ArticleDOI
Fragment Binding Pose Predictions Using Unbiased Simulations and Markov-State Models.
Stephanie M. Linker,Stephanie M. Linker,Aniket Magarkar,Jürgen Köfinger,Gerhard Hummer,Gerhard Hummer,Daniel Seeliger +6 more
TL;DR: A computational method is introduced which is able to reliably predict binding sites and binding modes of fragment-like small molecules using solely the structure of the apo-protein and the ligand's chemical structure as input information.