Showing papers by "Stephen L. Cameron published in 2008"
TL;DR: Comparisons of gene variability across the order suggest that the mitochondrial genes most frequently used in phylogenetic analysis of the Lepidoptera, cox1 and cox2, are amongst the least variable genes in the genome and phylogenetic resolution could be improved by using alternative, higher variability genes such as nad2, nad3, n ad4 and nad5.
327 citations
TL;DR: Six new complete mitochondrial genome descriptions are presented, including a representative of each suborder, and the evolution of mtgenomes from a comparative framework using all available coleopteran mt Genomes is analyzed.
Abstract: Coleoptera is the most diverse group of insects with over 360,000 described species divided into four suborders: Adephaga, Archostemata, Myxophaga, and Polyphaga. In this study, we present six new complete mitochondrial genome (mtgenome) descriptions, including a representative of each suborder, and analyze the evolution of mtgenomes from a comparative framework using all available coleopteran mtgenomes. We propose a modification of atypical cox1 start codons based on sequence alignment to better reflect the conservation observed across species as well as findings of TTG start codons in other genes. We also analyze tRNA-Ser(AGN) anticodons, usually GCU in arthropods, and report a conserved UCU anticodon as a possible synapomorphy across Polyphaga. We further analyze the secondary structure of tRNA-Ser(AGN) and present a consensus structure and an updated covariance model that allows tRNAscan-SE (via the COVE software package) to locate and fold these atypical tRNAs with much greater consistency. We also report secondary structure predictions for both rRNA genes based on conserved stems. All six species of beetle have the same gene order as the ancestral insect. We report noncoding DNA regions, including a small gap region of about 20 bp between tRNA-Ser(UCN) and nad1 that is present in all six genomes, and present results of a base composition analysis.
215 citations
TL;DR: The findings suggest that the best phylogenetic inferences are made when all available nucleotide data from themtgenome are analyzed simultaneously, and that the mtgenome data can resolve over a wide time scale from the Permian to the Tertiary.
185 citations
TL;DR: Analysis of all available hymenopteran mitochondrial genome sequences recovered an uncontroversial phylogeny, one consistent with analyses of other types of data.
Abstract: We sequenced the entire mitochondrial genome of Abispa ephippium (Hymenoptera: Vespoidea: Vespidae: Eumeninae) and most of the mitochondrial genome of Polistes humilis synoecus (Hymenoptera: Vespoi...
95 citations
TL;DR: Phylogenetic analyses of a concatenated amino acid dataset of all mt protein-coding genes of 28 arthropod species suggest a sister-group relationship of sarcoptiform and prostigmatid mites (S. magnus and Leptotrombidium) and further complete mt genomes are needed for solving phylogenetic relationships of oribatid mite lineages.
Abstract: Complete mitochondrial (mt) genomes and the gene rearrangements therein are increasingly used as molecular markers for investigating phylogenetic relationships, especially for elucidating deep splits. Contributing to the complete mt genomes of arthropods, especially Arachnida, available so far, we provide the first complete mt genome of a sarcoptiform mite species, the sexually reproducing oribatid mite Steganacarus magnus (Acari, Oribatida) which was determined by sequencing of long PCR products. The mt genome of S. magnus lacks 16 tRNAs, only those for leucine, histidine, proline, tryptophan, glutamine and serine are present. Within those tRNAs only tRNA-His and tRNA-Pro have kept their original position, the others are translocated. Furthermore, the mt genome of S. magnus consists of 13,818 bp and it is composed of 13 protein-coding genes and two genes for the ribosomal RNA subunits that are typically found in metazoan mt genomes. The gene order in S. magnus differs from the hypothetical ancestral chelicerate arrangement as conserved in Limulus polyphemus: instead of nad1-rrnL-rrnS-LNR-nad2 (tRNAs excluded) S. magnus is nad2-rrnL-nad1-rrnS-LNR. Phylogenetic analyses of a concatenated amino acid dataset of all mt protein-coding genes of 28 arthropod species suggest a sister-group relationship of sarcoptiform and prostigmatid mites (S. magnus and Leptotrombidium). The mt gene arrangement of S. magnus differs from the hypothetical ground plan of arthropods and from that of other mites further contributing to the variety of mt gene arrangements found in Arachnida. The unexpected lack of tRNAs is enigmatic, probably showing that the loss of mt genes is an ongoing evolutionary process. For solving phylogenetic relationships of oribatid mite lineages and their position within Acari further complete mt genomes are needed.
66 citations
TL;DR: It is suggested that the morphological differences between hypogean (cave) and epigean (surface) glow-worm larvae are facultative adaptations to local microclimatic conditions rather than due to the presence of cryptic species in caves.
40 citations
Journal Article•
TL;DR: The spiralisation pattern in Micromastigotes is not consistent with previous schemes for the development of a polymastigont condition in spirotrichonymphines suggesting that Micromastsigotes may represent an independent derivation of a trichomonad-like ancestor.
Abstract: This study redescribes the genus Micromastigotes, Hollande and Carruette-valentin, 1971, a parabasalid flagellate symbiotic in termites, on the basis of light and electron microscopy and erects a new species, M. scottae. The genus Micromastigotes is characterised by possessing flagella bands which spiral around the anterior portion of the cell, the location of the nucleus and Golgi bodies at the base of the anterior flagellated area, and an axostyle which runs the length of the cell. Individual flagella are derived from the central axis of the cell exiting perpendicularly, each is offset from the preceding flagellum by 12 - 18° thus forming a spiral band. Ultrastructurally, the flagella bases form a structure resembling a spiral staircase. Peltoaxostylar and preaxostylar fibres arise from the anterior most kinetosomes and the striated lamina forms a weakly undulating sheet directed posteriorly from each flagellum. Dense lamina and parabasal fibres are absent. Micromastigotes was originally classified as part of the Spirotrichonymphina and there are some similarities to other genera in this group, but Micromastigotes lacks a flagellar gutter, a U-shaped band at the base of the flagella composed of the striated and dense lamina, which is diagnostic of the spirotrichonymphines. The spiralisation pattern in Micromastigotes is not consistent with previous schemes for the development of a polymastigont condition in spirotrichonymphines suggesting that Micromastigotes may represent an independent derivation of a polymastigont condition from a trichomonad-like ancestor.
2 citations