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Stilianos Louca

Researcher at University of Oregon

Publications -  47
Citations -  4606

Stilianos Louca is an academic researcher from University of Oregon. The author has contributed to research in topics: Population & Phylogenetic tree. The author has an hindex of 16, co-authored 44 publications receiving 2574 citations. Previous affiliations of Stilianos Louca include University of British Columbia & Venezuelan Institute for Scientific Research.

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Decoupling function and taxonomy in the global ocean microbiome

TL;DR: It is found that environmental conditions strongly influence the distribution of functional groups in marine microbial communities by shaping metabolic niches, but only weakly influence taxonomic composition within individual functional groups.
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Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem.

TL;DR: It is found that regardless of the phylogenetic method tested, 16S GCNs could only be accurately predicted for a limited fraction of taxa, namely taxa with closely to moderately related representatives (≲15% divergence in the 16S rRNA gene) and all considered tools exhibit low predictive accuracy when evaluated against completely sequenced genomes.
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High taxonomic variability despite stable functional structure across microbial communities

TL;DR: It is found that all of the bromeliads exhibited remarkably similar functional community structures, but that the taxonomic composition within individual functional groups was highly variable, and that non-neutral processes at least partly shaped the composition within functional groups and were more important than spatial dispersal limitation and demographic drift.
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Efficient comparative phylogenetics on large trees.

TL;DR: A new R package, named ‘castor’, is presented, for comparative phylogenetics on large trees comprising millions of tips, which is often 100‐1000 times faster than existing tools.