T
T. Doerks
Researcher at University of Lausanne
Publications - 3
Citations - 2767
T. Doerks is an academic researcher from University of Lausanne. The author has contributed to research in topics: Shotgun sequencing & String (computer science). The author has an hindex of 2, co-authored 3 publications receiving 2530 citations.
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STRING 8—a global view on proteins and their functional interactions in 630 organisms
Lars Juhl Jensen,Michael Kuhn,Manuel Stark,Samuel Chaffron,Christopher J. Creevey,Jean Muller,T. Doerks,Philippe Julien,Alexander Roth,Milan Simonovic,Peer Bork,Christian von Mering +11 more
TL;DR: The most important new developments in STRING 8 over previous releases include a URL-based programming interface, improved interaction prediction via genomic neighborhood in prokaryotes, and the inclusion of protein structures.
Journal ArticleDOI
Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
C. von Mering,Philip Hugenholtz,Jeroen Raes,Susannah G. Tringe,T. Doerks,Lars Juhl Jensen,Naomi L. Ward,Peer Bork +7 more
TL;DR: This article used a set of protein-coding marker genes, extracted from large-scale environmental shotgun sequencing data, to provide a more direct, quantitative, and accurate picture of community composition than that provided by traditional ribosomal RNA-based approaches depending on the polymerase chain reaction.
Journal Article
Quantitative phylogenetic assessment of microbial communities in diverse environments
C. von Mering,Philip Hugenholtz,Jeroen Raes,Susannah G. Tringe,T. Doerks,Lars Juhl Jensen,Naomi L. Ward,Peer Bork +7 more
TL;DR: Mapping marker genes from four diverse environmental data sets onto a reference species phylogeny shows that certain communities evolve faster than others, and enables determination of preferred habitats for entire microbial clades and provides evidence that such habitat preferences are often remarkably stable over time.