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Naomi L. Ward
Researcher at University of Wyoming
Publications - 60
Citations - 10051
Naomi L. Ward is an academic researcher from University of Wyoming. The author has contributed to research in topics: Genome & Planctomycetes. The author has an hindex of 32, co-authored 59 publications receiving 9154 citations. Previous affiliations of Naomi L. Ward include University of Queensland & University of Maryland Biotechnology Institute.
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Journal ArticleDOI
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome”
Hervé Tettelin,Vega Masignani,Michael J. Cieslewicz,Claudio Donati,Duccio Medini,Naomi L. Ward,Samuel V. Angiuoli,Jonathan Crabtree,Amanda L. Jones,A. Scott Durkin,Robert T. DeBoy,Tanja M. Davidsen,Marirosa Mora,Maria Scarselli,Immaculada Margarit Y Ros,Jeremy Peterson,Christopher R. Hauser,Jaideep P. Sundaram,William C. Nelson,Ramana Madupu,Lauren M. Brinkac,Robert J. Dodson,M. J. Rosovitz,Steven A. Sullivan,Sean C. Daugherty,Daniel H. Haft,Jeremy D. Selengut,Michelle L. Gwinn,Liwei Zhou,Nikhat Zafar,Hoda Khouri,Diana Radune,George Dimitrov,Kisha Watkins,Kevin J. B. O'Connor,Shannon Smith,Teresa Utterback,Owen White,Craig E. Rubens,Guido Grandi,Lawrence C. Madoff,Dennis L. Kasper,John L. Telford,Michael R. Wessels,Rino Rappuoli,Claire M. Fraser +45 more
TL;DR: The genomic sequence of six strains representing the five major disease-causing serotypes of Streptococcus agalactiae, the main cause of neonatal infection in humans, was generated and Mathematical extrapolation of the data suggests that the gene reservoir available for inclusion in the S. agalactic pan-genome is vast and that unique genes will continue to be identified even after sequencing hundreds of genomes.
Journal ArticleDOI
The minimum information about a genome sequence (MIGS) specification.
Dawn Field,George M. Garrity,Tanya Gray,Norman Morrison,Jeremy D. Selengut,Peter Sterk,Tatiana Tatusova,Nicholas R. Thomson,Michael J. Allen,Samuel V. Angiuoli,Michael Ashburner,Nelson Axelrod,Sandra L. Baldauf,S. Ballard,Jeffrey L. Boore,Guy Cochrane,James R. Cole,Peter Dawyndt,Paul De Vos,Claude W. dePamphilis,Robert Edwards,Nadeem Faruque,Robert G. Feldman,Jack A. Gilbert,Paul Gilna,Frank Oliver Glöckner,Philip Goldstein,Robert P. Guralnick,Daniel H. Haft,David Hancock,Henning Hermjakob,Christiane Hertz-Fowler,Phil Hugenholtz,Ian Joint,Leonid Kagan,Matthew D. Kane,Jessie Kennedy,George A. Kowalchuk,Renzo Kottmann,Eugene Kolker,Saul A. Kravitz,Nikos C. Kyrpides,Jim Leebens-Mack,Suzanna E. Lewis,Kelvin Li,Allyson L. Lister,Phillip Lord,Natalia Maltsev,Victor Markowitz,Jennifer B. H. Martiny,Barbara A. Methé,Ilene Mizrachi,Richard Moxon,Karen E. Nelson,Julian Parkhill,Lita M. Proctor,Owen White,Susanna-Assunta Sansone,Andrew J. Spiers,Robert Stevens,Paul Swift,Chris F. Taylor,Yoshio Tateno,Adrian Tett,Sarah L. Turner,David W. Ussery,Bob Vaughan,Naomi L. Ward,Trish Whetzel,Ingio San Gil,Gareth A. Wilson,Anil Wipat +71 more
TL;DR: Here, the minimum information about a genome sequence (MIGS) specification is introduced with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange.
Journal ArticleDOI
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
John F. Heidelberg,Ian T. Paulsen,Karen E. Nelson,Eric Gaidos,Eric Gaidos,William C. Nelson,Timothy D. Read,Jonathan A. Eisen,Rekha Seshadri,Naomi L. Ward,Barbara A. Methé,Rebecca A. Clayton,Terry E. Meyer,A. I. Tsapin,James Scott,Maureen J. Beanan,Lauren M. Brinkac,Sean C. Daugherty,Robert T. DeBoy,Robert J. Dodson,A. Scott Durkin,Daniel H. Haft,James F. Kolonay,Ramana Madupu,Jeremy Peterson,Lowell Umayam,Owen White,Alex M. Wolf,Jessica Vamathevan,Janice Weidman,Marjorie Impraim,K. Lee,Kristy Berry,Chris Lee,Jacob L. Mueller,Hoda Khouri,John Gill,T. Utterback,Lisa McDonald,Tamara Feldblyum,Hamilton O. Smith,J. Craig Venter,Kenneth H. Nealson,Kenneth H. Nealson,Claire M. Fraser +44 more
TL;DR: This genome sequence represents a critical step in the elucidation of the pathways for reduction (and bioremediation) of pollutants such as uranium (U) and chromium (Cr), and offers a starting point for defining this organism's complex electron transport systems and metal ion–reducing capabilities.
Journal ArticleDOI
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
Naomi L. Ward,Jean F. Challacombe,Jean F. Challacombe,Peter H. Janssen,Peter H. Janssen,Bernard Henrissat,Pedro M. Coutinho,Martin Wu,Gary Xie,Gary Xie,Daniel H. Haft,Michelle Sait,Jonathan H. Badger,Ravi D. Barabote,Ravi D. Barabote,Brent Bradley,Thomas Brettin,Thomas Brettin,Lauren M. Brinkac,David Bruce,David Bruce,Todd Creasy,Sean C. Daugherty,Tanja M. Davidsen,Robert T. DeBoy,J. Chris Detter,J. Chris Detter,Robert J. Dodson,A. Scott Durkin,Anuradha Ganapathy,Michelle Gwinn-Giglio,Cliff Han,Cliff Han,Hoda Khouri,Hajnalka Kiss,Hajnalka Kiss,Sagar Kothari,Ramana Madupu,Karen E. Nelson,William C. Nelson,Ian T. Paulsen,Kevin Penn,Qinghu Ren,M. J. Rosovitz,Jeremy D. Selengut,Susmita Shrivastava,Steven A. Sullivan,Roxanne Tapia,Roxanne Tapia,L. Sue Thompson,L. Sue Thompson,Kisha Watkins,Qi Yang,Chunhui Yu,Nikhat Zafar,Liwei Zhou,Cheryl R. Kuske +56 more
TL;DR: Combining the genomic evidence with available culture traits, it is postulate that cells of these isolates are long-lived, divide slowly, exhibit slow metabolic rates under low-nutrient conditions, and are well equipped to tolerate fluctuations in soil hydration.
Journal ArticleDOI
Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments
Barbara A. Methé,Karen E. Nelson,Jonathan A. Eisen,Ian T. Paulsen,William C. Nelson,John F. Heidelberg,Dongying Wu,Martin Wu,Naomi L. Ward,Maureen J. Beanan,Robert J. Dodson,R. Madupu,Lauren M. Brinkac,Sean C. Daugherty,Robert T. DeBoy,Anthony S. Durkin,Michelle L. Gwinn,James F. Kolonay,Steven A. Sullivan,Daniel H. Haft,Jeremy D. Selengut,Tanja M. Davidsen,Nikhat Zafar,Owen White,Bao Tran,Claudia M. Romero,Heather Forberger,J. Weidman,H. Khouri,Tamara Feldblyum,T. Utterback,S. van Aken,Derek R. Lovley,Claire M. Fraser +33 more
TL;DR: The complete genome sequence of Geobacter sulfurreducens, a δ-proteobacterium, reveals unsuspected capabilities, including evidence of aerobic metabolism, one-carbon and complex carbon metabolism, motility, and chemotactic behavior, which suggest the organism has the potential for use in bioremediation of radioactive metals and in the generation of electricity.