Tim Keighley

TL;DR: Proteomic responses to water deficit were dynamic with early, significant changes in abundance of proteins involved in translation, energy, antioxidant defense and steroid metabolism, indicating massive and substantial changes in plant metabolism that appear to funnel carbon and energy into antioxidant defenses in the very early stages of plant response to water deficits before any significant injury.

TL;DR: Quantitative label-free shotgun proteomic analysis of four different root tissues resulted in identification of 1487 nonredundant proteins, with nearly 900 proteins present in triplicate in each treatment.

TL;DR: This chapter describes how to go from peptide to spectrum matching in a shotgun proteomics experiment using the XTandem algorithm, to simultaneous quantification of up to thousands of proteins, using normalized spectral abundance factors.

TL;DR: The alternative approach of using a remote analysis server which does not enable any data release, but instead is designed to deliver useful results of user-specified statistical analyses with a low risk of disclosure is discussed.

TL;DR: This work demonstrates the practical application of the ‘optimal’ CUSUM plans to daily counts of laboratory-notified influenza and Ross River virus diagnoses, with particular emphasis on the steady-state situation.