W
Wengong Jin
Researcher at Massachusetts Institute of Technology
Publications - 50
Citations - 4443
Wengong Jin is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Graph (abstract data type) & Generative model. The author has an hindex of 16, co-authored 45 publications receiving 2352 citations.
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Journal ArticleDOI
A Deep Learning Approach to Antibiotic Discovery
Jonathan M. Stokes,Kevin Yang,Kyle Swanson,Wengong Jin,Andres Cubillos-Ruiz,Nina M. Donghia,Craig R. MacNair,Shawn French,Lindsey A. Carfrae,Zohar Bloom-Ackermann,Victoria M. Tran,Anush Chiappino-Pepe,Ahmed H. Badran,Ian W. Andrews,Ian W. Andrews,Ian W. Andrews,Emma J. Chory,George M. Church,Eric D. Brown,Tommi S. Jaakkola,Regina Barzilay,James J. Collins +21 more
TL;DR: A deep neural network capable of predicting molecules with antibacterial activity is trained and a molecule from the Drug Repurposing Hub-halicin- is discovered that is structurally divergent from conventional antibiotics and displays bactericidal activity against a wide phylogenetic spectrum of pathogens.
Journal ArticleDOI
Analyzing Learned Molecular Representations for Property Prediction.
Kevin Yang,Kyle Swanson,Wengong Jin,Connor W. Coley,Philipp Eiden,Hua Gao,Angel Guzman-Perez,Timothy Hopper,Brian Kelley,Miriam Mathea,Andrew Palmer,Volker Settels,Tommi S. Jaakkola,Klavs F. Jensen,Regina Barzilay +14 more
TL;DR: In this article, a graph convolutional model that consistently matches or outperforms models using fixed molecular descriptors as well as previous graph neural architectures on both public and proprietary data sets is presented.
Proceedings Article
Junction Tree Variational Autoencoder for Molecular Graph Generation
TL;DR: The junction tree variational autoencoder generates molecular graphs in two phases, by first generating a tree-structured scaffold over chemical substructures, and then combining them into a molecule with a graph message passing network, which allows for incrementally expand molecules while maintaining chemical validity at every step.
Posted Content
Analyzing Learned Molecular Representations for Property Prediction
Kevin Yang,Kyle Swanson,Wengong Jin,Connor W. Coley,Philipp Eiden,Hua Gao,Angel Guzman-Perez,Timothy Hopper,Brian Kelley,Miriam Mathea,Andrew Palmer,Volker Settels,Tommi S. Jaakkola,Klavs F. Jensen,Regina Barzilay +14 more
TL;DR: A graph convolutional model is introduced that consistently matches or outperforms models using fixed molecular descriptors as well as previous graph neural architectures on both public and proprietary data sets.
Journal ArticleDOI
A graph-convolutional neural network model for the prediction of chemical reactivity
Connor W. Coley,Wengong Jin,Luke Rogers,Timothy F. Jamison,Tommi S. Jaakkola,William H. Green,Regina Barzilay,Klavs F. Jensen +7 more
TL;DR: A supervised learning approach to predict the products of organic reactions given their reactants, reagents, and solvent(s) is presented.