Showing papers in "Mitochondrial DNA Part B in 2019"
TL;DR: The chloroplast genome of C. japonica isolated in Soyeonpyeongdo located at the northernmost in South Korea is completed and Phylogenetic trees show that Camellia chekiangoleosa is clustered with Korean C. Japonica.
Abstract: Camellia japonica L. is an ornamental species due to its beautiful red flowers blooming in winter. Here, we completed the chloroplast genome of C. japonica isolated in Soyeonpyeongdo located at the northernmost in South Korea. Its length is 156,971 bp long and has four subregions: 86,673 bp of a large single copy (LSC) and 18,394 bp of small single copy (SSC) regions are separated by 25,952 bp of inverted repeat (IR) regions including 135 genes (91 protein-coding genes, 8 rRNAs, and 36 tRNAs). The overall GC content of this chloroplast genome is 37.3% and those in the LSC, SSC, and IR regions are 35.3%, 30.5%, and 43.0%, respectively. Twenty-five single nucleotide polymorphisms (SNPs) and two insertions and deletions (INDELs) are identified against Korean C. japonica isolated in Jeju island, while 78 SNPs and 643 INDELs are found against Chinese C. japonica. Phylogenetic trees show that Camellia chekiangoleosa is clustered with Korean C. japonica.
26 citations
TL;DR: Eighty-four single nucleotide polymorphisms and 125 insertions and deletions are identified between two individuals of P. palibiniana, showing that PPSC can be solved using complete chloroplast genomes.
Abstract: Pseudostellaria palibiniana which belongs to subseries Verticilatae is one of the species in Pseudostellaria palibiniana species complex (PPSC). To uncover intraspecies variation of P. palibiniana,...
23 citations
TL;DR: A 15,388 bp mitogenome of S. frugiperda is determined which includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs, and the mitochondrial genome can be used for understanding recent active migration of the fall armyworm.
Abstract: The fall armyworm, Spodoptera frugiperda, is a serious pest in large numbers on more than 350 plant species in the world. We have determined a 15,388 bp mitogenome of S. frugiperda which in...
22 citations
TL;DR: Phylogenetic analysis with 15 species revealed that E. tirucalli was close to E. esula, and the genome annotation displayed a total of 130 genes, comprising 83 protein-coding genes, 39 tRNA genes, and eight rRNA genes.
Abstract: Euphorbia tirucalli is a highly drought-tolerant shrub with a potential as biofuel source, which has an important ecological and economic value. The complete chloroplast genome sequence of E. tiruc...
22 citations
TL;DR: Phylogenetic trees show that four chloroplast genomes of M. polymorpha subsp.
Abstract: Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier is one of the common weeds as well as a model organism of a basal group of land plants. To understand the genetic diversity of M. polymor...
20 citations
TL;DR: The mitochondrial genome of L. striatellus collected in a mid-western part of Korean peninsula was determined and total 140 and 40 single nucleotide polymorphisms and 166 and 118 insertions and deletion were identified, presenting intra-species variations based on geographical distribution.
Abstract: A 16,359 bp mitochondrial genome of Laodelphax striatellus collected in a southern part of Korean peninsula was completed and their intraspecies variations were compared with Korean and Chinese L. ...
20 citations
TL;DR: The chloroplast genome of wild P. ussuriensis collected in Bonghwa-gun, Korea was completed and revealed substantial sequence variations up to 121 single nucleotide polymorphisms and 781 insertions and deletions against another wild accession of P. pyrifolia type plastome.
Abstract: Pyrus ussuriensis Maxim. is one of the most important pear species cultivated in Asia, grown in northern China, far-east Russia, Korea, and Japan. Here we completed the chloroplast genome of wild P...
19 citations
TL;DR: D. chrysantha is a traditional medicinal species of genus Duchesnea nested in Potentilla genus but having a significant key to be independent genus, and Phylogenetic trees show that two D. chysantha are clustered and distance between D. indica is enough to be separated species.
Abstract: Duchesnea chrysantha (Zoll. & Moritzi) Miq. is a traditional medicinal species of genus Duchesnea nested in Potentilla genus but having a significant key to be independent genus. In this study, we ...
18 citations
TL;DR: A phylogenetic tree based on maximum-likelihood analysis showed that Z. atratus is closely related to Ulomoides dermestoides, an important component of traditional Chinese medicine.
Abstract: The complete mitochondrial genome of Zophobas atratus (Fab.) (= Z. morio (Fab.), Z. rugipes Kirsch) is a circular molecule of 15,494 bp (GenBank accession MK140669), with 72.01% A + T content, whic...
18 citations
TL;DR: Phylogenetic analysis showed that the morphotype of G. schlechtendaliana with column appendages is sister to a normal form of G.
Abstract: Goodyera schlechtendaliana is a common orchid species in East Asia. A distinctive population of G. schlechtendaliana with the lateral appendages of the column in their flowers was found in southwes...
18 citations
TL;DR: It is valuable to understand the reason why mitochondrial genomes of M. polymorpha subsp.
Abstract: Based on previous studies of Marchantia polymorpha subsp. ruderalis chloroplast genomes, few sequence variations were identified. Here, we sequenced complete mitochondrial genome of Korean isolate,...
TL;DR: Even though relatively low number of sequence variations on coffee chloroplast genomes, these results can be used as a corner stone for establishing molecular markers to identify its origin or cultivars.
Abstract: Coffea arabica L. taking 70% of world coffee production is also used as an ornamental species. One imported coffee tree from Indonesia near to thirty years ago of which leaf is wrinkled (named as I...
TL;DR: 25 single nucleotide polymorphisms and two insertions and deletions suggest multiple invasive origins in Korea.
Abstract: We completed chloroplast genome of Dysphania pumilio (R.Br.) Mosyakin & Clemants isolated in Anyang city in Korea. Its length is 151,960 bp consisting four subregions: 83,756 bp of large single cop...
TL;DR: The mitochondrial genome of N. lugens captured in Guangdong province, China was completed and ninety single nucleotide polymorphisms and ten insertions and deletions are identified by comparing with Korean N. Lugens.
Abstract: Nilaparvata lugens, called as brown planthoppers (BPH), is one of the important pests on rice. To identify the origin of Korean N. lugens, we completed the mitochondrial genome of N. lugens capture...
TL;DR: Twenty-five single nucleotide polymorphisms (SNPs) are identified within two Jeju island chloroplast genomes, presenting that C. japonica tree in Wimi-ri is genetically far from the two chloropleft genomes.
Abstract: Camellia japonica L. usually blooms red flower in winter in Jeju island, Korea, considered a species which should not be planted in the garden. Here, we completed chloroplast genome of C. japonica ...
TL;DR: Nilaparvata lugens is one of important pests of rice causing severe damage in early September in Korea after migrating from China, and a need for further analyses to classify biotypes based on complete mitochondrial genomes.
Abstract: Nilaparvata lugens is one of important pests of rice causing severe damagein early September in Korea after migrating from China. We completed mitogenome of N. lugens captured in Korea. The...
TL;DR: Phylogenetic analyses show that V. erosum is sister to Viburnum japonicum, supporting morphological affinity of the two species.
Abstract: Viburnum erosum is a deciduous shrub distributed in eastern Asia. As part of the systematic study to understand the phylogenetic relationship of V. erosum, we present the complete chloroplast genome of V. erosum. Its length is 158,624 bp and it has four subregions: 87,060 bp of large single-copy and 18,530 bp of small single-copy regions separated by a pair of inverted repeat regions of 26,517 bp each, including 129 genes (84 protein-coding genes, 8 rRNAs, and 37 tRNAs). Phylogenetic analyses show that V. erosum is sister to Viburnum japonicum, supporting morphological affinity of the two species.
TL;DR: Complete chloroplast genome is presented andPhylogenetic trees show that A. coreanum occupied a basal position at subgenus Aconitum clade and two A.coreanum isolated from midwestern and eastern regions of Korea are clustered together.
Abstract: Aconitum coreanum (H. Lev.) Rapaics listed in the Korean Red List is a medicinal herb. We presented complete chloroplast genome, which is 157,024 bp long and has four subregions: 87,637 bp of large...
TL;DR: A complete chloroplast genome from male individual of S. koriyanagi is presented and phylogenetic trees show phylogenetic relationship of Salix and Populus genera.
Abstract: As a Korean endemic plant, Salix koriyanagi Kimura ex Goerz belongs to the genus Salix L. which is the largest genus of Salicaceae. In this study, we presented a complete chloroplast genome from ma...
TL;DR: The phylogenetic tree confirms that E. heimianus and Sophonia linealis are clustered into a clade and enriches the mitogenomes of the Evacanthinae subfamily.
Abstract: We have sequenced the complete mitochondrial genome (mitogenome) of the leafhopper Evacanthus heimianus in Evacanthinae, the mitogenome is 15,806 bp, has an A + T content of 79.89% (A 40.7%...
TL;DR: The complete chloroplast genome of the Korean G. schlechtendaliana is presented, including 133 genes (86 protein-coding genes, eight rRNAs, and 39 tRNAs), andylogenetic analyses suggest that it should be useful in future phylogeographic and phylogenetic studies of Goodyera.
Abstract: Goodyera schlechtendaliana is a common orchid species in East Asia, providing a case to study phylogeographic structure of understory plants in warm temperate forests. Here, we present the complete...
TL;DR: Phylogenetic trees present that three mitochondrial genomes of C. suppressalis have enough variations within a species, which can be a candidate to understand its origin and geographical distribution using molecular marker sequences.
Abstract: We have determined the mitochondrial genome of Chilo suppressalis (Walker, 1863) collected in Korea. The circular mitogenome of C. suppressalis was 15,341 bp including 13 protein-coding genes, two ...
TL;DR: The complete chloroplast genome sequence was assembled by high-throughput sequencing and bioinformatics to provide more genomic information to the analysis of genetic diversity and phylogenetic relationship of Lycoris radiata.
Abstract: Lycoris radiata, widely known as red spider lily. It belongs to the Amaryllidaceae family and has highly ornamental and medical value. Here, we assembled the complete chloroplast genome sequence by...
TL;DR: Aphid gosypii Glover, 1877 is a widely recognized economically important aphid species in the world as mentioned in this paper and the mitochondrial genome of A. gossypii collected in Korean peninsula is determined.
Abstract: Aphid gosypii Glover, 1877 is a widely recognized economically important aphid species in the world. We have determined mitochondrial genome of A. gossypii collected in Korean peninsula. The circular mitogenome of A. gossypii is 15,872 bp including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a single control region of 627 bp. The base composition was AT-biased (83.8%). In comparison of Chinese A. gossypii mitochondrial genomes with that of Korean sample, 61 single nucleotide polymorphisms and 3 insertions and deletions were identified, presenting lower level of those of Nilaparvata lugens, Laodelphax striatellus, and Chilo suppresallis.
TL;DR: The chloroplast genome will be a fundamental data to understand morphological diversity of A. distichum and 90-three single nucleotide polymorphisms (SNPs) and 56 insertion and deletions (INDELs) are identified against previous A.distichum chlorOPlast genome.
Abstract: Abeliophyllum distichum Nakai is the only species in Abeliophyllum genus, which is Korean endemic. Ok Hwang 1ho, the first official cultivar of A. distichum., displays that colour of corolla is lig...
TL;DR: Phylogenetic analysis highly supported the monophyly of both Chalcidoidea and Pteromalidae, and the mitochondrial genome of Encyrtus infelix has a dramatic gene rearrangement.
Abstract: The mitochondrial genome of the Encyrtus infelix was sequenced and it is the first completed mitochondrial genome of species in the family Encyrtidae (Hymenoptera: Chalcidoidea). This mitochondrial genome is 15,698 bp in length with 37 classical eukaryotic mitochondrial genes and an A + T-rich region. All the 13 PCGs begin with typical ATN codons. Among them, seven genes terminate with TAA, one with TA– and five with T––. All of the 22 tRNA genes range from 56 to 70 bp with typical cloverleaf structure except for trnS1, whose dihydrouridine (DHU) arm forms a simple loop. Gene directions and arrangements are similar to Eurytoma sp. mitochondrial genome. Encyrtus infelix also has a dramatic gene rearrangement, the placements of some genes are peculiar to Chalcidoidea. Phylogenetic analysis highly supported the monophyly of both Chalcidoidea and Pteromalidae.
TL;DR: Phylogenetic analysis showed that H. contortus NZ_Hco_NP forms a monophyletic cluster with the remaining three Haemonchidae species, and further illustrates the high levels of diversity and gene flow among Trichostrongylidae.
Abstract: The complete mitochondrial genome of the New Zealand parasitic nematode Haemonchus contortus field strain NZ_Hco_NP was sequenced and annotated. The 14,001 bp-long mitogenome contains 12 protein-co...
TL;DR: The partial sequence of mitochondrial COI gene was found to be a good DNA barcode for fast and accurate species identification of fishes in Lake Lanao and for tagging species that warrant further taxonomic investigation.
Abstract: Lake Lanao, the second largest lake in the Philippines and one of the 15 ancient lakes in the world, used to contain 20 endemic cyprinid species, which had attracted the attention of evolutionary b...
TL;DR: The phylogenomic analysis revealed that C. rupestris was sister to C. macrolepis and C. formosana with strong support and the overall GC content of this plastome was 34.8%.
Abstract: Calocedrus rupestris is listed as endangered on the IUCN Red List. In this study, we report the complete chloroplast genome (plastome) of C. rupestris. The plastome was 127,298 bp in length and enc...
TL;DR: The topology demonstrated that the mitogenome of this species was genetically closest to that of Zoothera aurea, and can contribute to the understanding of the phylogeny and evolution of zoothera and Geokichla.
Abstract: This paper reports the mitochondrial genome of Geokichla sibirica sibirica, which is a closed circular molecule of 16766 bp. All gene conformations were consistent with the gene arrangement in vert...