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Journal ArticleDOI

Approximate methods for calculating hydrodynamic properties of macromolecules in dilute solution. Theory and application to rigid structures

José García de la Torre, +3 more
- 01 Jul 1983 - 
- Vol. 16, Iss: 7, pp 1121-1127
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TLDR
In this paper, the authors examined several approximate methods that can be used to calculate hydrodynamic properties of macromolecules in solution and compared the relative performance of the methods.
Abstract
In this work we examine several approximate methods that can be used to calculate hydrodynamic properties of macromolecules in solution. We consider some well-known approximations such as the preaveraging approximation and the double-sum formula of Kirkwood for translation. We also consider newer methods such as the diagonal approximation and other double-sum formulas for rotation and viscosity. The obvious advantage of the approximate methods is that they require much less computational effort than the rigorous treatments. We first describe the nature of the approximations used in the various methods. Then we calculate translational and rotational coefficients and intrinsic viscosities of rigid rods and rings and other polygonal or polyhedral structures, using both the rigorous theory and the approximate methods. This enables us to determine the errors of the methods in terms of the geometry and size of the structures. The relative performance of the methods is discussed. A remarkable finding is the large effect from preaveraging the interaction tensor on the rotational coefficients and intrinsic viscosities. This effect is generally larger than that caused by the approximations used to derive the double-sum formulas.

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Citations
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Journal ArticleDOI

Hydrodynamic properties of rodlike and disklike particles in dilute solution

TL;DR: In this paper, the hydrodynamic properties of cylindrical (rodlike and discoidal) particles in dilute solution have been computed using the bead-shell model treatment.
Journal ArticleDOI

Hydrodynamic properties of rigid particles: comparison of different modeling and computational procedures.

TL;DR: This work has developed procedures to build models of the various kinds, and it describes the theory and methods for calculating their hydrodynamic properties, including approximate methods that may be needed to treat models with a very large number of elements.
Journal ArticleDOI

Bending and twisting dynamics of short linear DNAs. Analysis of the triplet anisotropy decay of a 209 base pair fragment by Brownian simulation

TL;DR: Brownian dynamics is used to simulate the decay anisotropy of short linear DNA fragments modeled as a string of beads as mentioned in this paper, which is sufficiently general to allow for static bends, anisotropic bending, and elastic constants for bending and twisting which can vary along the chain.
Book ChapterDOI

Conformational Properties of Branched Polymers: Theory and Simulations

TL;DR: In this article, a review of the application of numerical simulation techniques to relevant theoretical problems concerning branched polymer systems, taking also into account the related experimental data, is presented, where Monte Carlo, molecular dynamics and Brownian dynamics methods are employed to simulate the equilibrium and dynamic behavior, and also to reproduce hydrodynamic properties.
Journal ArticleDOI

Translational friction coefficients for cylinders of arbitrary axial ratios estimated by Monte Carlo simulation

TL;DR: Translational friction coefficients for cylinders of arbitrary axial ratios are calculated using Monte Carlo simulation and an approximate description of the hydrodynamic interaction and indicate that the approximate description is exact for ellipsoids and this result is generalized to include cylinders, which possess the same symmetry as ellipSOids.
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