Database on the structure of large ribosomal subunit RNA
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TLDR
The latest release of the large ribosomal subunit RNA database contains 429 sequences, all of which are aligned, and incorporate secondary structure information.Abstract:
The latest release of the large ribosomal subunit RNA database contains 429 sequences. All these sequences are aligned, and incorporate secondary structure information. The rRNA WWW Server at URL http://rrna.uia.ac.be/ provides researchers with an easily accessible resource to obtain the data in this database in a number of computer-readable formats. A new query interface has been added to the server. If necessary, the data can also be obtained by anonymous ftp from the same site.read more
Citations
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SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
TL;DR: SEAVIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular phylogenetics.
Journal ArticleDOI
The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
Jamie J. Cannone,Sankar Subramanian,Sankar Subramanian,Murray N. Schnare,James R. Collett,Lisa M. D'Souza,Yushi Du,Brian Feng,Nan Lin,Lakshmi V. Madabusi,Kirsten M. Müller,Kirsten M. Müller,Nupur T. Pande,Zhidi Shang,Nan Yu,Robin R. Gutell +15 more
TL;DR: This online RNA sequence and structure information, the result of extensive analysis, interpretation, data collection, and computer program and web development, is accessible at the Comparative RNA Web (CRW) Site.
Journal ArticleDOI
Design and Evaluation of Useful Bacterium-Specific PCR Primers That Amplify Genes Coding for Bacterial 16S rRNA
Julian R. Marchesi,Takuichi Sato,Andrew J. Weightman,Tracey Amanda Martin,John C. Fry,Sarah J. Hiom,William G. Wade +6 more
TL;DR: PCR primers 63f and 1387r were found to be more useful for 16S rRNA gene amplification in ecological and systematic studies than PCR amplimers that are currently more generally used.
Journal ArticleDOI
Investigating Deep Phylogenetic Relationships among Cyanobacteria and Plastids by Small Subunit rRNA Sequence Analysis
TL;DR: Small subunit rRNA sequence data were generated for 27 strains of cyanobacteria and incorporated into a phylogenetic analysis of 1,377 aligned sequence positions, finding all plastids cluster as a strongly supported monophyletic group arising near the root of the cyanobacterial line of descent.
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16S Ribosomal DNA Sequence Analysis of a Large Collection of Environmental and Clinical Unidentifiable Bacterial Isolates
Michel Drancourt,C. Bollet,Antoine Carlioz,Rolland Martelin,Jean-Pierre Bernard Gayral,Didier Raoult +5 more
TL;DR: The utility of 16S rDNA sequencing as a means to identify a collection of 177 isolates obtained from environmental, veterinary, and clinical sources was evaluated and it was found that unlike phenotypic identification,16S r DNA sequencing provides unambiguous data even for rare isolates, which are reproducible in and between laboratories.
References
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