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Journal ArticleDOI

The stable states picture of chemical reactions. II. Rate constants for condensed and gas phase reaction models

Richard F. Grote, +1 more
- 15 Sep 1980 - 
- Vol. 73, Iss: 6, pp 2715-2732
TLDR
In this paper, the stable states picture (SSP) was used to derive the time correlation function (tcf) for the rate constant κ for a wide variety of gas and solution phase reaction models.
Abstract
The time correlation function (tcf) formulas for rate constants κ derived via the stable states picture (SSP) of chemical reactions are applied to a wide variety (a–d) of gas and solution phase reactionmodels. (a) For gas phase bimolecular reactions, we show that the flux tcf governing κ corresponds to standard numerical trajectory calculation methods. Alternate formulas for κ are derived which focus on saddle point surfaces, thus increasing computational efficiency. Advantages of the SSP formulas for κ are discussed. (b) For gas phase unimolecular reactions, simple results for κ are found in both the strong and weak coupling collision limits; the often ignored role of product stabilization is exposed for reversible isomerizations. The SSP results correct some standard weak coupling rate constant results by as much as 50%. (c) For barrier crossing reactions in solution, we evaluate κ for a generalized (non‐Markovian) Langevin description of the dynamics. For several realistic models of time dependent friction, κ differs dramatically from the popular Kramers constant friction predictions; this has important implications for the validity of transition state theory. (d) For solutionreactions heavily influenced by spatial diffusion, we show that the SSP isolates short range reaction dynamics of interest and includes important barrier region effects in structural isomerizations often missed in standard descriptions.

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Citations
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Reaction-rate theory: fifty years after Kramers

TL;DR: In this paper, the authors report, extend, and interpret much of our current understanding relating to theories of noise-activated escape, for which many of the notable contributions are originating from the communities both of physics and of physical chemistry.
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Current status of transition-state theory

TL;DR: In this article, the authors present an overview of the current status of transition-state theory and its generalizations, including recent improvements in available methodology for calculations on complex systems, including the interface with electronic structure theory, progress in the theory and application of transitionstate theory to condensed-phase reactions, and insight into the relation of transition state theory to accurate quantum dynamics.
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Atomic-Level Characterization of the Structural Dynamics of Proteins

TL;DR: Simulation of the folding of a WW domain showed a well-defined folding pathway and simulation of the dynamics of bovine pancreatic trypsin inhibitor showed interconversion between distinct conformational states.
References
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Book ChapterDOI

Monte Carlo Trajectory Calculations of Atomic and Molecular Excitation in Thermal Systems

TL;DR: In this paper, the authors present a systematic discussion of Monte Carlo methods for examining thermal excitation and dissociation in atomic and molecular systems, and the most important advantage of sampling inside the collision complex is that the reaction probability for excitation or dissociation can be increased sufficiently to make Monte Carlo calculations for these processes relatively efficient.
Journal ArticleDOI

Hard‐Sphere Model for the Dissociation of Diatomic Molecules

TL;DR: In this paper, a simple classical model for the activation of diatomic molecules interacting with a heat bath of monatomic particles is proposed, where the diatomic molecule are considered as hard spheres connected by springs and the monatomic particle as hard sphere.
Journal ArticleDOI

Stability and relative stability in reactive systems far from equilibrium. II. Kinetic analysis of relative stability of multiple stationary states

TL;DR: In this article, the relative stability of multiple stationary states in chemically reactive systems far from equilibrium from a stochastic point of view was analyzed and the concept of mean first passage time was invoked to measure the tendency of transition from one stationary state to the other.
Journal ArticleDOI

A test of the validity of the combined phase-space/trajectory method

TL;DR: The validity of the combined phase−space/trajectory method of analysis of chemical reactions in thermal systems is tested by comparison of three-dimensional trajectory calculations for a reaction A + BB? AB + B similar to the reaction F + H2? HF + H as discussed by the authors.
Journal ArticleDOI

Brownian dynamics simulation of alkane chain reorientation: A comparison of models

TL;DR: In this article, the correlation functions obtained from Brownian dynamics were found to display a rapid initial decrease, followed by a slow nearly exponential falloff, and the first and second rank correlation times for pentane, hexane, nonane, and undecane were reported.
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