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Thermodynamics of the Conversion of Chorismate to Prephenate: Experimental Results and Theoretical Predictions

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TLDR
In this paper, a thermodynamic investigation of the Claisen rearrangement of chorismate2-(aq) to prephenate2(aq) has been performed using microcalorimetry and high-performance liquid chromatography.
Abstract
A thermodynamic investigation of the Claisen rearrangement of chorismate2-(aq) to prephenate2-(aq) has been performed using microcalorimetry and high-performance liquid chromatography. The study used a well-characterized monofunctional chorismate mutase from Bacillus subtilis that was devoid of prephenate dehydrogenase and prephenate dehydratase activities. The calorimetric measurements led to a standard molar enthalpy change = −(55.4 ± 2.3) kJ mol-1 at 298.15 K for this reaction. An estimated value of the standard molar entropy change = 3 J K-1 mol-1 for the above reaction was used together with the experimental value of to obtain a standard molar Gibbs free energy change ≈ −56 kJ mol-1 and an equilibrium constant K ≈ 7 × 109 for the conversion of chorismate2-(aq) to prephenate2-(aq) at 298.15 K. Thus, for all practical purposes, this reaction can be considered to be “irreversible”. Quantum mechanics (Gaussian 94 with a B3LYP functional and a 6-31G* basis set) was used to calculate values of absolute and...

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The biosynthesis of shikimate metabolites

TL;DR: This review covers the literature published during 2000 on the biosynthesis of compounds derived wholly or partly from intermediates on the shikimate pathway, including pyrrolnitrin, violacein, indole-3-acetic acid, coumarins, lignanoids, ubiquin one, TOPA quinone, PQQ, and tropanes.
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Investigating and Engineering Enzymes by Genetic Selection.

TL;DR: In vivo genetic selection strategies enable the exhaustive analysis of protein libraries with 10(10) different members, and even larger ensembles can be studied with in vitro methods, thus providing access to novel proteins with tailored catalytic activities and selectivities.
Journal ArticleDOI

A DFT-Based QM-MM Approach Designed for the Treatment of Large Molecular Systems: Application to Chorismate Mutase

TL;DR: In this article, a density functional theory (DFT) hybrid quantum mechanical/molecular mechanical (QM-MM) implementation developed for simulations of reactions in complex environments is presented.
Journal ArticleDOI

Multiple-steering QM-MM calculation of the free energy profile in chorismate mutase.

TL;DR: A novel technique for computing free energy profiles in enzymatic reactions using the multiple steering molecular dynamics approach in the context of an efficient QM-MM density functional scheme is presented.
Journal ArticleDOI

Tyrosine biosynthesis, metabolism, and catabolism in plants.

TL;DR: The interspecies variations of plant Tyr pathway enzymes can now be used to enhance the production of Tyr and Tyr-derived compounds in plants and other synthetic biology platforms.
References
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Journal ArticleDOI

Solvent Effects. 5. Influence of Cavity Shape, Truncation of Electrostatics, and Electron Correlation on ab Initio Reaction Field Calculations

TL;DR: In this article, the reaction field model is extended to include higher-order electrostatic interactions, and two new and efficient implementations of the polarizable continuum model (PCM) are described, which allow a more realistic specification of the solute cavity as well as infinite order electrostatics, and compare theoretical results to the experimentally known conformational equilibrium between syn and anti forms of furfuraldehyde and the C−C rotational barrier of (2-nitrovinyl)amine.
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Size Effect in Heterogeneous Nucleation

TL;DR: In this paper, the effect of particle size and surface properties on nucleation efficiency was investigated for condensation, sublimation, and freezing of water on foreign nuclei, assuming a spherical nucleating particle.
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Additivity Rules for the Estimation of Molecular Properties. Thermodynamic Properties

TL;DR: In this article, a general limiting law is proposed which can be used to systematize the various laws of additivity of molecular properties, including the law of group additivity.
Journal ArticleDOI

Estimation of the Thermodynamic Properties of C-H-N-O-S-Halogen Compounds at 298.15 K

TL;DR: In this article, the entropy of formation, Gibbs energy of formation and natural logarithm of the equilibrium constant for the formation reaction are also calculated provided necessary auxiliary data are available.
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