Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

The Theory of Island Biogeography

https://www.cs.princeton.edu/~schapire/papers/ecolmod.pdf

Maximum entropy modeling of species geographic distributions

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Computational evolutionary biology, statistical phylogenetics and coalescent-based population genetics are becoming increasingly central to the analysis and understanding of molecular sequence data. We present the Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package version 1.7, which implements a family of Markov chain Monte Carlo (MCMC) algorithms for Bayesian phylogenetic inference, divergence time dating, coalescent analysis, phylogeography and related molecular evolutionary analyses. This package includes an enhanced graphical user interface program called Bayesian Evolutionary Analysis Utility (BEAUti) that enables access to advanced models for molecular sequence and phenotypic trait evolution that were previously available to developers only. The package also provides new tools for visualizing and summarizing multispecies coalescent and phylogeographic analyses. BEAUti and BEAST 1.7 are open source under the GNU lesser general public license and available at http://beast-mcmc.googlecode.com and http://beast.bio.ed.ac.uk

/pdf/bayesian-phylogenetics-with-beauti-and-the-beast-1-7-2xkb29qdvu.pdf

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Ecological changes in the phenology and distribution of plants and animals are occurring in all well-studied marine, freshwater, and terrestrial groups These observed changes are heavily biased in the directions predicted from global warming and have been linked to local or regional climate change through correlations between climate and biological variation, field and laboratory experiments, and physiological research Range-restricted species, particularly polar and mountaintop species, show severe range contractions and have been the first groups in which entire species have gone extinct due to recent climate change Tropical coral reefs and amphibians have been most negatively affected Predator-prey and plant-insect interactions have been disrupted when interacting species have responded differently to warming Evolutionary adaptations to warmer conditions have occurred in the interiors of species’ ranges, and resource use and dispersal have evolved rapidly at expanding range margins Observed genetic shifts modulate local effects of climate change, but there is little evidence that they will mitigate negative effects at the species level

https://www.fws.gov/southwest/es/documents/R2ES/LitCited/LPC_2012/Parmesan_2006.pdf

Ecological and Evolutionary Responses to Recent Climate Change

With the emergence of a new field, biodiversity informatics, an important task has been to evaluate completeness of biodiversity information that is existing and available for various countries and regions. This paper offers a first and very basic assessment of sampling gaps and inventory completeness across the Cameroon Mountains. Because digital accessible knowledge is severely limited for the region, we relied on qualitative evaluations of inventory completeness, supplemented by large amounts of data from the National Herbarium of Cameroon (YA) database. Detailed botanical inventories have been developed for Mt Cameroon, the Kupe-Mwanenguba Mountains, Mt Oku, and the Mambila Plateau, leaving substantial geographic and environmental coverage gaps corresponding to Rumpi Hills, Mt Nlonako, Kimbi Fungom National Park, Bali and Bafut Ngemba, Mt Bamboutos, Kagwene, and Tchabal Mbabo. This paper provides a roadmap for a comprehensive botanical survey for this region. Completing this survey plan, the resulting data will allow researchers to track changes in biodiversity and identify priority areas for conservation on the various mountain ranges that make up this important biodiversity hotspot.

/pdf/botanical-sampling-gaps-across-the-cameroon-mountains-3wwf8ff9qt.pdf

Botanical Sampling Gaps Across the Cameroon Mountains

Review of Effects of Climate Change on Birds.—Anders Pape Moller, Wolfgang Fieldler, and Peter Berthold, editors. 2010. Oxford University Press, New York. 321 pp. + 9 color plates. ISBN-978-0-19-956975-5. $117.00 (hard cover).

/pdf/effects-of-climate-change-on-birds-3zfyo6avcz.pdf

Effects of Climate Change on Birds

Ixodes cookei Packard, the groundhog tick or woodchuck tick, is the main known vector of Powassan virus (POWV) disease in North America and an ectoparasite that infests diverse small- and mid-size mammals for blood meals to complete its life stages. Since I. cookei spends much of its life cycle off the host and needs hosts for a blood meal in order to pass to the next life stage, it is susceptible to changes in environmental conditions. We used a maximum-entropy approach to ecological niche modeling that incorporates detailed model-selection routes to link occurrence data to climatic variables to assess the potential geographic distribution of I. cookei under current and likely future climate conditions. Our models identified suitable areas in the eastern United States, from Tennessee and North Carolina north to southern Canada, including Nova Scotia, New Brunswick, eastern Newfoundland and Labrador, southern Quebec, and Ontario; suitable areas were also in western states, including Washington and Oregon and restricted areas of northern Idaho, northwestern Montana, and adjacent British Columbia, in Canada. This study produces the first maps of the potential geographic distribution of I. cookei. Documented POWV cases overlapped with suitable areas in the northeastern states; however, the presence of this disease in areas classified by our models as not suitable by our models but with POWV cases (Minnesota and North Dakota) requires more study.

Potential geographic distribution of Ixodes cookei, the vector of Powassan virus

Getting the Ploceidae tree right.

An important methodological and analytical requirement for analyzing spatial relationships between regional habitats and species distributions in Mexico is the development of standard methods for mapping the country's land cover/land use formations. This necessarily involves the use of global data such as that produced by the Advanced Very High Resolution Radiometer (AVHRR). We created a nine‐band time‐series composite image from AVHRR Normalized Difference Vegetation Index (NDVI) bi‐weekly data. Each band represented the maximum NDVI for a particular month of either 1992 or 1993. We carried out a supervised classification approach, using the latest comprehensive land cover/vegetation map created by the Mexican National Institute of Geography (INEGI) as reference data. Training areas for 26 land cover/vegetation types were selected and digitized on the computer's screen by overlaying the INEGI vector coverage on the NDVI image. To obtain specific spectral responses for each vegetation type, as de...

A. Townsend Peterson

Papers

Botanical Sampling Gaps Across the Cameroon Mountains

Effects of Climate Change on Birds

Potential geographic distribution of Ixodes cookei, the vector of Powassan virus

Getting the Ploceidae tree right.

Mapping the Land Cover of Mexico Using AVHRR Time‐Series Data Sets